Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0704
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0) 37 0.011
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08) 31 0.71
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05) 29 3.8
SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_17660| Best HMM Match : Meleagrin (HMM E-Value=5.9) 27 8.7
SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02) 27 8.7
SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11) 27 8.7
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_6169| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
Length = 926
Score = 37.1 bits (82), Expect = 0.011
Identities = 26/77 (33%), Positives = 37/77 (48%)
Frame = +2
Query: 2 QQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASG 181
Q+RWF + G+LSYY + + RG +LA A I ED+ +F I+
Sbjct: 331 QRRWFVLS--NGLLSYYR-----NQAEMAHTCRGTINLAGAFI--DTEDACSFVISNGGT 381
Query: 182 DMLKLRATDARARQEWV 232
+ LRA+ RQ WV
Sbjct: 382 QVFHLRASTEVERQRWV 398
>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
Length = 1907
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -3
Query: 509 RWRCSTPRHCSRHCMLPADVAFKSNKIRIRVKERXNLKTLCSAR 378
RW P +HC P+DV+ SNKI +RV + N KTL A+
Sbjct: 1362 RWDSCAP-DTKQHCS-PSDVS--SNKIDVRVPDADNEKTLTKAQ 1401
>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Frame = +2
Query: 2 QQRWFAVDPETGVLSYYLYDGPGDTIQP------GQPARGEAHLAAAVICPSDEDSKTFT 163
Q+RW + E G+LSY+LY G T P Q A + V+C + ++
Sbjct: 280 QRRWCVL--EGGMLSYWLYPGDETTKAPLGSLDLSQCASSHVTTVSRVLC-ARPNTMELV 336
Query: 164 INCASGDMLK-LRATDARA-RQEWVD 235
IN + +K L A D +A + W+D
Sbjct: 337 INKGDNNSIKYLLAADTKADKVTWLD 362
>SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)
Length = 533
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 578 PLELGPNVSLSECLK-KTVKRGVLRWRCSTPRHCSRHCML 462
P E + EC KT+K G++ WR P +C++ +L
Sbjct: 316 PFESSCPPGVKECGPVKTIKEGMMYWRGIVPENCTKENLL 355
>SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 2 QQRWFAVDPETGVLSYYLY-DGPGDT-IQPGQPARGEAHLAAAVICPSDEDSKTFTINCA 175
Q+RWF ++ GVL Y++Y D G T IQ G H + + +TF+I
Sbjct: 21 QRRWFVLN-SAGVLEYFIYDDSHGATDIQVGNI---NVHDCTNIFNGESDTGETFSIGLK 76
Query: 176 SGDM-LKLRATDARARQEW 229
S ++ L+A + W
Sbjct: 77 SENVNYYLKAENRLEMDNW 95
>SB_17660| Best HMM Match : Meleagrin (HMM E-Value=5.9)
Length = 310
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 70 RHNTAWTAGQGGGSFSCSSDMPKRRRLQDLHH 165
RHN GS C D P+RRR+ HH
Sbjct: 181 RHNNCSEYDVSYGSDECCHDHPERRRVGCSHH 212
>SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)
Length = 376
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -1
Query: 319 RGPRAALSAAG-AGWPPSPWCVSSNGPXPVDPLLARAGVGSSQLQ 188
RG R LS A P PW P PVD AR+ G QL+
Sbjct: 116 RGQRPNLSPPWIAPEPVPPWTKLEQDPPPVDSARARSPRGRRQLK 160
>SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)
Length = 587
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 197 RATDARARQEWVDGXRAIAGYTP 265
RA + RA Q+W + +AG TP
Sbjct: 141 RAAETRATQQWWSAVKPVAGMTP 163
>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1297
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 103 GGSFSCSSDMPKRRRLQDLHHKLRVRRHVEAE 198
G FSC++ P L+DL+ + R RR VEAE
Sbjct: 671 GVRFSCNAGQPLNDTLEDLNARRRDRR-VEAE 701
>SB_6169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 361 VRSLVLLPWPTPWRRGPRAA 302
VR VL+PW W GPR A
Sbjct: 25 VRLAVLIPWTGNWPAGPRLA 44
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 88 TAGQGGGSFSCSSDMPK-RRRLQDLHHKLRVRRHVEAE 198
++GQGG + + +M + R+ QD HKL H E E
Sbjct: 1268 SSGQGGANEAIIKEMEQLRQEQQDYQHKLDKLTHAEQE 1305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,391,805
Number of Sequences: 59808
Number of extensions: 340089
Number of successful extensions: 968
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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