Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0704
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol bin...    39   0.002
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    29   1.9  
Z80221-2|CAB02310.1|  405|Caenorhabditis elegans Hypothetical pr...    27   7.7  
X54355-1|CAA38240.1|  382|Caenorhabditis elegans lin-11 protein ...    27   7.7  

>AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol
           binding protein (osbp)related protein 4, isoform a
           protein.
          Length = 676

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
 Frame = +2

Query: 2   QQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASG 181
           Q RWF ++ +T  L YY      + +  GQ  RG+  L  AV+    E++  FTI    G
Sbjct: 16  QYRWFKIENDT--LLYYT---SREKMLKGQQ-RGQIRLTGAVVGIDGENNSLFTIT-VEG 68

Query: 182 DMLKLRATDARARQEWV----DGXRAIAGY 259
               ++  D R R +WV    +  RA +GY
Sbjct: 69  KTFHMQGRDLRERNQWVRILENSIRASSGY 98


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -2

Query: 303 LSRLQG-RVGPHHLG-VYPAMALXPSTHSWRARASVALSFNMSPDAQFMVKVLESSSLGH 130
           +S  QG ++ P+ L  V  A  L    H  R      + + M+  A  +V +L S++  H
Sbjct: 180 VSTTQGVKLEPNELETVMDACNLAAQLHVNRLEMHQLVEWRMALIAPNLVALLGSTTTAH 239

Query: 129 ITAAAK*ASPLAGCPGCIV 73
           + + A   SPLA  P C V
Sbjct: 240 LVSQAGGLSPLATMPSCNV 258


>Z80221-2|CAB02310.1|  405|Caenorhabditis elegans Hypothetical
           protein ZC247.3 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 420 CEGKXESEDSMQRARGRVTEFGRLYCCLGXR 328
           C+GK E ED ++RAR +V       C +  R
Sbjct: 130 CDGKLEKEDLVRRARDKVFHIRCFQCSVCQR 160


>X54355-1|CAA38240.1|  382|Caenorhabditis elegans lin-11 protein
           protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 420 CEGKXESEDSMQRARGRVTEFGRLYCCLGXR 328
           C+GK E ED ++RAR +V       C +  R
Sbjct: 107 CDGKLEKEDLVRRARDKVFHIRCFQCSVCQR 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,369,433
Number of Sequences: 27780
Number of extensions: 236391
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)