Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0704
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.32 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.32 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   3.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 92  AVQAVLCLLVHHKDNKIEHQS 30
           A  AV CLL HH+D  +   S
Sbjct: 529 ATMAVACLLFHHRDTPVVRAS 549


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 92  AVQAVLCLLVHHKDNKIEHQS 30
           A  AV CLL HH+D  +   S
Sbjct: 619 ATMAVACLLFHHRDTPVVRAS 639


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 491 PRHCSRHCMLP-ADVAFKSNKIRIRVKERXNLKTLCSAR 378
           P HCS HC      VA     +R+   ER     LC+A+
Sbjct: 37  PYHCS-HCDRQFVQVANLRRHLRVHTGERPYACELCAAK 74


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 62  HHKDNKIEHQSQDQQQTIFA 3
           HH+D+  EH S  ++   F+
Sbjct: 106 HHQDSSSEHASNQERFGYFS 125


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -3

Query: 98  WPAVQAVLCLLVHHKDNKIEHQSQDQQQ 15
           WPA   +       +  + + Q Q QQQ
Sbjct: 781 WPATSVITTTTGARQQQQQQQQQQQQQQ 808


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,123
Number of Sequences: 438
Number of extensions: 2710
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)