Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0703
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    45   4e-06
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    45   4e-06
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    29   0.30 
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    28   0.40 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   0.70 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   0.93 
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    27   1.2  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    25   3.7  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   3.7  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   4.9  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   4.9  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   6.5  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.5  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    24   6.5  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 44.8 bits (101), Expect = 4e-06
 Identities = 19/46 (41%), Positives = 33/46 (71%)
 Frame = +2

Query: 131 LFDKPTYEKLYKXVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
           +FDK   +++ K VP +K I+ +V+ +R+K+ GSLAR A+ DL ++
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66



 Score = 29.9 bits (64), Expect = 0.13
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 256 LREKGLIKQVVQHHGQVIYTRA 321
           L E+G+I++V QH  Q IYTRA
Sbjct: 63  LAERGVIQKVDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 44.8 bits (101), Expect = 4e-06
 Identities = 19/46 (41%), Positives = 33/46 (71%)
 Frame = +2

Query: 131 LFDKPTYEKLYKXVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
           +FDK   +++ K VP +K I+ +V+ +R+K+ GSLAR A+ DL ++
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAER 66



 Score = 28.3 bits (60), Expect = 0.40
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 256 LREKGLIKQVVQHHGQVIYTR 318
           L E+G+I++V QH  Q IYTR
Sbjct: 63  LAERGVIQKVDQHSKQAIYTR 83


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 28.7 bits (61), Expect = 0.30
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 152 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 39
           +M  YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 28.3 bits (60), Expect = 0.40
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = -1

Query: 282 LFDETFFPKSMSALLAREPRTFN--LSDTTAGVISLYCGTXLYSFSYVGLSNNT---WLF 118
           +F+  F+   M+ +  +    FN  LSD    VIS   G   Y F  V LS+ T   W  
Sbjct: 198 VFNAHFYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYR 257

Query: 117 NLSRTFPLDHF 85
           N +  +P+  F
Sbjct: 258 NANFPYPIITF 268


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 159  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 61
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 0.93
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 33  KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 131
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 255 SMSALLAREPRTFNLSDTTAGVISLYCGTXLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL 76
           S+SA        FNL+    GV ++  G    +F+ + + +  W F +    P+D   FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFL 197

Query: 75  -ALP 67
            ALP
Sbjct: 198 EALP 201


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -1

Query: 192 VISLYCGTXLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 61
           V+ +     ++ F  +G+ N         T P  +F+ L  PPP
Sbjct: 38  VVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 353 IVYATGSSPLVARV*ITCPWCWTTCLMRP 267
           I+Y T ++P++  + +T   CW   L  P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 12  RLRPNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRN 158
           R  PNS+K+ +R  K P++     +S P+   +T   +R   +   +RN
Sbjct: 150 RTTPNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRN 195


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 324 GRTRVDHLPMVLDYLFDETFFPKSMSALLAREPRTFNLS 208
           G TR+D L  + +Y+  E   PK     L ++ + + +S
Sbjct: 139 GNTRLDLLNQLSEYISPEILLPKRRLEHLLQQAKDYQVS 177


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 138 SNNTWLFNLSRTFPLDHFFFLAL 70
           S N+W+F L  TF     F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 80  SWLCRHRILPSSSVFFEAVW 21
           +WL +  ++PSSS F  + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -1

Query: 333 IALGRTRVDHLPMVLDYLFDETFFPKSMSALLAREPRTFNLSDTTAGVISLY 178
           I LG+     + +VLD  FD+    K +++L  +  R  + + T    + L+
Sbjct: 85  IRLGKVVPSSIRIVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELF 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,552
Number of Sequences: 5004
Number of extensions: 31156
Number of successful extensions: 132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)