Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0703
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 69 9e-13
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 69 9e-13
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 53 6e-08
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.28
10_01_0146 - 1719997-1720386,1721498-1721515 29 0.86
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 3.5
04_03_0916 + 20794240-20794246,20794585-20796545 27 3.5
02_03_0349 + 18010414-18014283 27 3.5
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 27 6.1
04_04_1699 + 35462160-35462555,35463114-35463196,35463317-354633... 27 6.1
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 26 8.1
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 26 8.1
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 26 8.1
04_04_0176 - 23329589-23331043 26 8.1
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 26 8.1
02_05_0114 + 25958834-25961296 26 8.1
01_06_0968 + 33466574-33466607,33467087-33467115,33467438-334675... 26 8.1
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 69.3 bits (162), Expect = 9e-13
Identities = 31/48 (64%), Positives = 40/48 (83%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKXVPQYKLITPAVVSERLKVRGSLARRALIDL 259
+NN VLFD+ TY+KL VP+YK ITP+V+SERL++ GSLARRA+ DL
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDL 84
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYTRAT 324
L ++GLI+ V H Q IYTRAT
Sbjct: 84 LMDRGLIRMVSVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 69.3 bits (162), Expect = 9e-13
Identities = 31/48 (64%), Positives = 40/48 (83%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKXVPQYKLITPAVVSERLKVRGSLARRALIDL 259
+NN VLFD+ TY+KL VP+YK ITP+V+SERL++ GSLARRA+ DL
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDL 84
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRAT 324
++ + L +GLI+ V H Q IYTRAT
Sbjct: 79 RAINDLMTRGLIRMVSVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 53.2 bits (122), Expect = 6e-08
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2
Query: 116 LNNQVLFDKPTYEKLYKXVPQYKLITPAVVSERLK 220
+NN VLFDK TY+KL VP+YK ITP+V+SERL+
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 256 LREKGLIKQVVQHHGQVIYTRAT 324
L +G I+ V H Q+IYTRAT
Sbjct: 1102 LESRGAIRVVSVHSSQLIYTRAT 1124
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.28
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 7 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 132
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 29.5 bits (63), Expect = 0.86
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 3 RTRRLRPNSLKKHRRRRKDPVAAKPRRRS 89
R ++P+ + RRRR +P +PRRR+
Sbjct: 77 RAAEMQPDDGGQRRRRRSEPATTQPRRRA 105
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 13 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 129
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 206 IRQQV*LACTVGLPCTVSH-MWVYQTTPGCSTCHELFLWTTSSSWLCRHRI 57
I Q + L +G C + VY+ P S H+LF T+ +W R+ I
Sbjct: 399 IIQHINLVKLIGFCCEGGRRLLVYEHMPNRSLDHQLFQTNTTLTWNIRYEI 449
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 140 KPTYEKLYKXVPQYKLITPAVVSERL 217
KPT E+L K +PQ K++ AV E +
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHI 64
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 247 THRLREKGLIKQVVQHHG 300
TH++R + LI+QV+QH G
Sbjct: 1455 THKMRAEHLIRQVLQHLG 1472
>04_04_1699 +
35462160-35462555,35463114-35463196,35463317-35463378,
35463745-35463806,35463932-35463991,35464079-35464111,
35464196-35464261,35464349-35464393
Length = 268
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 9 RRLRPNSLKKHRRRRKDPVAAKPRRRSGP 95
R+ P KHRR R D A PR+R P
Sbjct: 31 RQRPPPGPTKHRRLRHDADAQPPRKRGHP 59
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 179 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 48
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 264 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 306
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 363 NLYHSLCDWIIALGRTRVDHLP 298
NL+H++ DW A +RV LP
Sbjct: 347 NLFHTITDWYSAYVSSRVTDLP 368
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -2
Query: 119 STCHELFLWTTSSSWLCRHRILPSSSVFF--EAVWPKPSRP 3
STCH++ L S WL L S + F E VW P P
Sbjct: 261 STCHKMQLPFKLSDWLSTVPTLTSLHLDFQDEMVWILPEEP 301
>04_04_0176 - 23329589-23331043
Length = 484
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 4 GREGFGQTASKNTEEEGRIRWRQSQEEEVVQR 99
GR+GF + EE GR R R +EE +R
Sbjct: 405 GRDGFDLSRKHGHEERGRYRPRVLEEEREHER 436
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 219 FNLSDTTAGVISLYCGTXLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 76
F ++ A +I++Y S +G + WL+NL FPLD FL
Sbjct: 843 FFVAQLIATLIAVYANWAFTSIKGIGWGWAGIVWLYNLVFYFPLDIIKFL 892
>02_05_0114 + 25958834-25961296
Length = 820
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 179 TVGLPCTVSHMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPS 48
T PC++S M V C TC+++ S +CR ++PS
Sbjct: 146 TCATPCSLSFM-VDCLIKACITCYDVQATICLFSGICRLGVVPS 188
>01_06_0968 +
33466574-33466607,33467087-33467115,33467438-33467595,
33468319-33468436,33468520-33468708,33469008-33469343,
33469468-33469569,33469696-33469890,33469993-33470155,
33470314-33470579,33470670-33470765,33470860-33471255,
33471403-33471501
Length = 726
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -1
Query: 294 VLDYLFD----ETFFPKSMSALLAREPRTFNLSDTTAGVISL 181
V+D+L D TFFP+ +S + T+ SD GVI L
Sbjct: 281 VVDFLMDPYNYRTFFPEVISGAVTNRIYTWPTSDGYNGVIQL 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629,157
Number of Sequences: 37544
Number of extensions: 220287
Number of successful extensions: 693
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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