Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0703
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34555.1 68417.m04910 40S ribosomal protein S25, putative           66   9e-12
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            66   9e-12
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo...    64   2e-11
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)            64   3e-11
At5g64950.1 68418.m08170 mitochondrial transcription termination...    29   0.97 
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ...    29   0.97 
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim...    27   5.2  
At1g24706.1 68414.m03104 expressed protein                             27   5.2  
At4g27630.1 68417.m03971 expressed protein                             26   9.0  
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin...    26   9.0  

>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
          Length = 108

 Score = 65.7 bits (153), Expect = 9e-12
 Identities = 28/51 (54%), Positives = 41/51 (80%)
 Frame = +2

Query: 116 LNNQVLFDKPTYEKLYKXVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
           +NN VLFD+ TY+KL    P++KLITP+++S+RL++ GSLARRA+ +L  K
Sbjct: 37  VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAK 87



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRATKG 330
           ++   L  KG I+ V  H  Q IYTRAT G
Sbjct: 79  RAIRELMAKGTIRMVSAHSSQQIYTRATHG 108


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 65.7 bits (153), Expect = 9e-12
 Identities = 27/48 (56%), Positives = 40/48 (83%)
 Frame = +2

Query: 116 LNNQVLFDKPTYEKLYKXVPQYKLITPAVVSERLKVRGSLARRALIDL 259
           +NN VLFD+ TY+KL    P++KLITP+++S+RL++ GSLAR+A+ DL
Sbjct: 53  VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDL 100


>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
           ribosomal protein S25, Lycopersicon esculentum,
           PIR2:S40089
          Length = 108

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 27/51 (52%), Positives = 41/51 (80%)
 Frame = +2

Query: 116 LNNQVLFDKPTYEKLYKXVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
           +NN VLFD+ TY+KL    P++KLITP+++S+R+++ GSLARRA+ +L  K
Sbjct: 37  VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRAT 324
           ++   L  KG+I+ V  H  Q IYTRAT
Sbjct: 79  RAIRELMAKGVIRMVAAHSSQQIYTRAT 106


>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
          Length = 108

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 27/51 (52%), Positives = 41/51 (80%)
 Frame = +2

Query: 116 LNNQVLFDKPTYEKLYKXVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
           +NN VLFD+ TY+KL    P++KLITP+++S+R+++ GSLARRA+ +L  K
Sbjct: 37  VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 241 KSTHRLREKGLIKQVVQHHGQVIYTRAT 324
           ++   L  KGLI+ V  H  Q IYTRAT
Sbjct: 79  RAIRELMAKGLIRMVSAHSSQQIYTRAT 106


>At5g64950.1 68418.m08170 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 391

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 351 SLCDWIIALGRTRVDHLPMVLDYLFDETFFPKSMSALLAREPRTFNLSD 205
           S C W++      +  LP +  YL         +++LL R+PR FNLS+
Sbjct: 166 SRCGWLLLSRDPNLFLLPNI-SYLETCGIVGSQLASLLRRQPRIFNLSE 213


>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 436

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 180 YCGTXLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 40
           +C   LY+F  + + +   TW F +  +  + +   +A+  P+P  F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390


>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 154 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 62
           ++CG + +H V++L   F+ G L  +GF  T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 117  NLSRTFPLDHFFFLALPPPDP 55
            +L ++ P DHF    LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582


>At4g27630.1 68417.m03971 expressed protein
          Length = 348

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 308 ITCPWCWTTCLMRPFSL 258
           I  P CWTT L  PF L
Sbjct: 4   ILSPTCWTTLLKHPFIL 20


>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
            [Arabidopsis thaliana] GI:6491702; similar to myosin
            GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
            profiles: PF00063: myosin head (motor domain), PF00612:
            IQ calmodulin-binding motif; identical to cDNA myosin
            (ATM) GI:297068
          Length = 1166

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 176  QYKLITPAVVSERLKVRGSLARRALIDLGKKVSSNR*SNTMG 301
            QYK I  A V  +  +RG L RR   D+G   S    +N +G
Sbjct: 907  QYKGIADASVVIQSAIRGWLVRRCSGDIGWLKSGGAKTNELG 948


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,354,087
Number of Sequences: 28952
Number of extensions: 169730
Number of successful extensions: 519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)