Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0702
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152...    28   4.8  
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085...    28   4.8  
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448           28   4.8  
09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337...    27   6.3  
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    27   6.3  
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907...    27   6.3  

>12_01_1116 +
           11914352-11914415,11915049-11915158,11915254-11915295,
           11916263-11916430,11916506-11916682,11916848-11917051,
           11917125-11917319
          Length = 319

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 270 DMVGRRLRTLAPFVLRGACPQCSVQESRHIRRTLAYIQR 386
           +MV   +  LA F+L   C  C V+ S+H+R T  YI++
Sbjct: 186 EMVTDSIIKLACFLLD--CEYCDVKNSKHLRWTGEYIEK 222


>01_05_0495 +
           22705697-22705765,22705903-22706025,22708429-22708586,
           22709162-22709206,22709367-22709445,22709522-22709595,
           22709703-22709809,22711116-22711301,22711882-22711920,
           22712020-22712086,22712207-22712281,22713113-22713347,
           22713425-22713755,22714530-22714710,22714810-22714950,
           22715041-22715302,22715503-22715892,22717179-22717735,
           22718421-22718557,22718672-22718853,22718959-22719339,
           22719420-22719545,22719635-22719700,22720056-22721839,
           22721914-22722193,22722386-22722616,22723067-22723588,
           22723683-22723815,22723937-22724193
          Length = 2405

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 367 VRRMCRDSCTEH*GHAPLNTNGANVLNLLPTISQGPSPVHI*DVFA-LCLYQQGFFLIVH 191
           VR    +S +    +AP       V N+L   ++ PSPVHI  + A LC   +G +  +H
Sbjct: 196 VREFMAESVSFVLRNAPNGQQIEGVRNVLLEAAKNPSPVHIDGITALLCHVMRGTYTRLH 255


>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
          Length = 850

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 279 GRRLRTLAPFVLRGACPQCS---VQESRHIRRTLAYIQRNYPWE 401
           G  L +LAP + R A P C+   V  S  I +++  ++ +YPW+
Sbjct: 93  GETLASLAP-LRRLALPACAHRRVPPSSSIAKSILQLEHDYPWD 135


>09_06_0373 +
           22632638-22633195,22633279-22633485,22633583-22633798,
           22635375-22635441,22635531-22635677,22635811-22635906,
           22636530-22636642,22636732-22636868,22637096-22637336
          Length = 593

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 178 VPPTQLKRDTYIHQ*KLYSSFQNDISFVLSVID 80
           VPPT  KR   ++   L S +QN+I F    ID
Sbjct: 232 VPPTVKKRGLVLNDAMLCSYYQNEIKFTDLTID 264


>08_02_1143 +
           24659105-24659386,24660171-24660272,24661259-24661521,
           24661775-24661874,24662080-24662238,24662327-24663147,
           24663299-24663618,24665831-24667398
          Length = 1204

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 103 RYHFEMKNIVFIGVCTCLVLTVLAAPQ 183
           RYHF+ K + F     C+VL++L  P+
Sbjct: 83  RYHFKFKLLSFGHFLFCIVLSILYGPR 109


>03_03_0274 -
           16089322-16089365,16089604-16089616,16090367-16090714,
           16090771-16090974,16091403-16091504,16091710-16091741,
           16092668-16093655,16094461-16094711,16095786-16097795,
           16097903-16097954
          Length = 1347

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 127 YSSFQNDISFVLSVIDARTIYNRVIMGLKIFP 32
           Y  F    S + S  + RTI+NR++MG  I P
Sbjct: 511 YPEFDYVQSMMFSHKNCRTIWNRLLMGYDILP 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,042,012
Number of Sequences: 37544
Number of extensions: 304526
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)