Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0702
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6)                      29   2.1  
SB_32055| Best HMM Match : OTU (HMM E-Value=5.5)                       27   6.5  
SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)                      27   6.5  
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_46422| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)             27   8.6  

>SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6)
          Length = 410

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +3

Query: 249 CTGEGPCDMVGRRLRTLAPFVLRGA--CPQCSVQESRHIRRTLAYI-QRNYPWEWARIVR 419
           C GE    M+G  L +L  F+L+    C   ++ +   +  T+ Y+ +  YP E  R+  
Sbjct: 316 CLGESHQQMIGTVLCSLLEFILKNIVFCSSNALDDISSLMATVGYVLEEKYPHELDRLFN 375

Query: 420 QYG*RF 437
               RF
Sbjct: 376 LIRDRF 381


>SB_32055| Best HMM Match : OTU (HMM E-Value=5.5)
          Length = 263

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 254 SAHLRCLCIVPLSARVFSNCASDICGAANTVKTRHVHTPMKTIFF 120
           +A+L  LC +P++  +  +C    C     VK   +++    IFF
Sbjct: 102 NANLLSLCYIPVNCFIICHCLLHSCDHLLPVKITEIYSIFVKIFF 146


>SB_18553| Best HMM Match : fn3 (HMM E-Value=0.25)
          Length = 1702

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 240  SQMCTGEGPCDMVGRRLRTLAPFVLRGACPQCSVQE 347
            ++ C G  P      R+R + P  +  +C  C++QE
Sbjct: 1271 TEYCVGSTPAGCQISRMREILPTAMHVSCNDCNLQE 1306


>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 183 LRCRQHS*NETRTYTNENYILHFKMISRSCCP 88
           L  R +  N  R   NENY L  K +  +C P
Sbjct: 103 LHMRDNENNTLRMRDNENYTLRMKRLCANCSP 134


>SB_46422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 249 TSEMSLHCAFISKGFF*LCIRHLRCRQHS*NETRTYTNENYIL 121
           T E  LH AFI K      I  +  ++H  N+ R YT++NY++
Sbjct: 396 TPEFPLHHAFIDK------IWDMWEKKHKVNKYRYYTSQNYLM 432


>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
          Length = 406

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 249 TSEMSLHCAFISKGFF*LCIRHLRCRQHS*NETRTYTNENYIL 121
           T E  LH AFI K      I  +  ++H  N+ R YT++NY++
Sbjct: 339 TPEFPLHHAFIDK------IWDMWEKKHKVNKYRYYTSQNYLM 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,610,105
Number of Sequences: 59808
Number of extensions: 370449
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)