Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0702
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    30   1.1  
U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical ...    28   4.3  
AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical ...    27   7.6  

>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 433 LQPYCRTILAHSHG 392
           L+PYC TI+ HSHG
Sbjct: 224 LRPYCNTIMRHSHG 237


>U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical
           protein T26A8.4 protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 345 PARNIEGMRLSTQTAPTFSIFSPPYRRDLH 256
           P R IE  RLSTQT P      P   R +H
Sbjct: 377 PPRTIEPPRLSTQTPPIMHQQQPQLMRPMH 406


>AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical
           protein H11E01.2 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 178 PQMSDAQLEKTLADKGTMQRHLRCALVKV 264
           PQM++ +LEK    KG ++ H +  + K+
Sbjct: 208 PQMTETELEKIRRGKGEVKEHEKAPIAKI 236


>AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical
           protein Y15E3A.4 protein.
          Length = 469

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 178 PQMSDAQLEKTLADKGTMQRHLRCALVKV 264
           PQM++ +LEK    KG ++ H +  + K+
Sbjct: 219 PQMTEIELEKIHRGKGDVKEHEKAPIAKI 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,138,697
Number of Sequences: 27780
Number of extensions: 267773
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)