Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0702
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13740.1 68418.m01599 sugar transporter family protein contai...    29   1.7  
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical...    27   7.0  
At5g53750.1 68418.m06679 expressed protein strong similarity to ...    27   7.0  
At1g77060.1 68414.m08972 mutase family protein similar to carbox...    27   7.0  
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa...    27   7.0  
At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative  (...    27   9.3  
At3g11580.2 68416.m01415 DNA-binding protein, putative similar t...    27   9.3  

>At5g13740.1 68418.m01599 sugar transporter family protein contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 486

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 324 CPQCSVQESRHIRRTLAYIQRNYPW 398
           CP C V++ + +RR   Y++ ++ W
Sbjct: 19  CPGCKVEQMKQLRRGYPYLELSFVW 43


>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
           UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
           [Arabidopsis thaliana]; contains Pfam 00415: Regulator
           of chromosome condensation (RCC1)
          Length = 440

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 276 VGRRLRTLAPFVLRGACPQCSVQESRHIRRTLAYIQRNYPWEWAR 410
           VG  L   +P  +R    Q  VQ S   R TLA  +RN  + W R
Sbjct: 310 VGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGR 354


>At5g53750.1 68418.m06679 expressed protein strong similarity to
           unknown protein (pir||T08938)
          Length = 427

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 388 TTHGNGRESYDNTAEDLIKF*IDVRFIYS 474
           TTH N RE    T ED+I+F +D   ++S
Sbjct: 162 TTHKNSREFCWITQEDIIRFLLDSISVFS 190


>At1g77060.1 68414.m08972 mutase family protein similar to
           carboxyvinyl-carboxyphosphonate phosphorylmutase
           GB:O49290 from [Arabidopsis thaliana]; similar to
           carboxyphosphonoenolpyruvate mutase (GI:47149)
           [Streptomyces hygroscopicus]; contains Prosite PS00161:
           Isocitrate lyase signature
          Length = 339

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 310 TNGANVLNLLPTISQGPSPVHI*DVFALCLYQQGFFLIVHPTSAV 176
           T G  V N+   I  G +P+H  D     L + GF LIVHP +A+
Sbjct: 241 TKGYRVCNM---IEGGVTPLHTPDE----LKEMGFHLIVHPLTAL 278


>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
           family protein low similarity to polycomb-M33
           interacting protein Ring1B [Mus musculus] GI:2239142;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 427

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 178 PQMSDAQLEKTLADKGTMQRHLRCALVKVPAIWWGED*ERWRR 306
           P  S+A      A  GT Q H R + V  P + W  +   W R
Sbjct: 275 PSSSNANNNDNCAGNGTEQTHQRDSRVISPVLVWNSELIAWGR 317


>At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative
           (AMP1) identical to GI:15624092 glutamate
           carboxypeptidase {Arabidopsis thaliana}; ileal
           peptidase, Rattus norvegicus, EMBL:AF009921; identical
           to cDNA glutamate carboxypeptidase (AMP1) GI:15624091;
           contains Pfam profiles PF04389: Peptidase family M28,
           PF04253: Transferrin receptor-like dimerisation domain
           and PF02225 PA domain
          Length = 705

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 238 VFALCLYQQGFFLIVHPTSAVPPTQLKRDTY 146
           +F + L+   F+ + HP +  PP    R+ Y
Sbjct: 29  LFVIVLFVATFYTLHHPDAVTPPLLFSRNAY 59


>At3g11580.2 68416.m01415 DNA-binding protein, putative similar to
           DNA-binding proteins from [Arabidopsis thaliana] RAV1
           GI:3868857 and RAV2 GI:3868859, AP2 domain containing
           protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 230

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 363 GECAATPARNIEGMRLSTQTAPTFSIFSPPYRRDLHQCTSEMSLHCAFISKGFF 202
           GE +++PA ++        T   +S  + PYR+ +H  T+  ++H  +   G F
Sbjct: 143 GEASSSPAVSVVSQEALVNTTAYWSGLTTPYRQ-VHASTTYPNIHQEYSHYGKF 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,200,826
Number of Sequences: 28952
Number of extensions: 238527
Number of successful extensions: 434
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)