Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0700
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.8  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   3.2  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   7.3  

>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 245 LLKPSLKYYLFFFTTIFVAMIT*NY-LFNGIYVSIK**VTRALTNKQN 105
           L+ PSL++ L +FT  +   +   Y  F+GIY+ +K  + ++   K N
Sbjct: 18  LISPSLRFILAYFTHRYPRFLLRAYNSFDGIYLLVKLLLEKSQLKKWN 65


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 470 NIRFCIFYFLFFATC 514
           +I FC+FY LFF  C
Sbjct: 105 DIAFCLFYALFFTFC 119


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 501 NKK*NIQNLMFHYTQRRGINLFHPCTYLLYILSIGY 394
           N+K  +  ++ H    +GI+L H    + Y+ S+G+
Sbjct: 414 NRKRKVTEILLHQLGFKGISLSHGKEIVRYLRSLGH 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,676
Number of Sequences: 5004
Number of extensions: 34988
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)