Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0699
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p... 79 3e-16
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 2.4
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 26 3.2
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 4.2
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 4.2
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 26 4.2
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 4.2
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 5.6
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 7.3
>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 85
Score = 79.4 bits (187), Expect = 3e-16
Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Frame = +3
Query: 111 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTGIASWVVILARM 290
AVIK DMSE+MQQ+A+ A QA+EKF IEKDIAAFIK+EFDKK++PT W I+ R
Sbjct: 2 AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPT----WHCIVGRN 57
Query: 291 *HTRLATSSTS----TWGQWAILLFKSG 362
+ + S G A LLFKSG
Sbjct: 58 FGSFVTHESRHFIYFYLGTVAFLLFKSG 85
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 370 MV*PLLKSSIAHCPQVEVDEVASLVCHI 287
M+ PL+KS +V +DEV SLVC +
Sbjct: 493 MLCPLVKSLDKSSSEVIIDEVISLVCDL 520
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 223 LMNAAMSFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCFC 74
L N SF + N + A+ C+SSL+ L L W+C C
Sbjct: 139 LKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKC 188
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 72 KQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE 200
+QKQ + + RK K M+E+ + + + L K N+E
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVE 569
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 183 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 70
++L L + QH+ L SC ++L +L H CL F++ S
Sbjct: 39 KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 4.2
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = -2
Query: 355 LKSSIAHCPQVEV--DEVASLVCHIRAKITTHDAMPVGLYFLSNSFLMNAAMSFSMLNFS 182
L S + CP +V +E+ L IR I ++ P L+ N F + + LNF
Sbjct: 14 LLSRLEGCPSEKVLLEELRKLRGFIRNDIPSN-FFPQ-LFITDNGFAA-IKKAVTKLNFQ 70
Query: 181 SA*VAQSTASCCISSLMSAFFMTALRSHILS 89
S ++ CC+ L A T LRS +LS
Sbjct: 71 SL-LSLDIFECCLQILGIATSYTILRSWLLS 100
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 4.2
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +3
Query: 66 LSKQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKY 245
L + + ++++ V++N D+ ++QD E +NI + A + K +Y
Sbjct: 93 LQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQEHYNITPERIAVLYKFAQFQY 152
Query: 246 N--PTGIASWVVILARM*HTRLATSSTSTWGQWA 341
N G AS ++ R ++++TWG++A
Sbjct: 153 NCGNYGGASDLLYHFRAFSKDPELNASATWGKFA 186
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 411 YCVRC*QKNRSDAKWSNRS 355
YC+RC ++ D+ W++RS
Sbjct: 539 YCLRCVYDDKMDSLWNSRS 557
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 75 QKQTQD--KMCDRKAVIKNADMSEEMQQDAVDCATQALEKF 191
+K+T + KM K ++K AD+S +Q+D + T+ LEK+
Sbjct: 521 EKKTDEPVKMRKVKKLVKVADLSVSVQEDRL--PTEVLEKY 559
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 185 LERLSCTVNSILLHLFAHVSILYDCF 108
LE L+ +N + +FA++ + DCF
Sbjct: 565 LEFLNSCINRCISRVFAYLDVCVDCF 590
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,061
Number of Sequences: 5004
Number of extensions: 40372
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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