Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0699
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)               108   3e-24
SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.005

>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score =  108 bits (259), Expect = 3e-24
 Identities = 61/94 (64%), Positives = 68/94 (72%), Gaps = 5/94 (5%)
 Frame = +3

Query: 96  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTGIASWVV 275
           M +RKAVIKNADM+E+MQ DA++CATQALEKFNIEKDIAAFIKKEFDKKYNPT    W  
Sbjct: 1   MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPT----WHC 56

Query: 276 ILARM*HTRLATSSTSTW-----GQWAILLFKSG 362
           I+ R       T  T  +     GQ AILLFKSG
Sbjct: 57  IVGRN-FGSYVTHETKHFIYFYLGQVAILLFKSG 89


>SB_6167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 114 VIKNADMSEEMQQDAVDCATQALEKFNIEKDIAA-FIKKEFDKKYNPTGIASWVVIL 281
           +I+ +DM++EM+ +A++    A EKF+   + AA  IK+  DKK+     ASW  ++
Sbjct: 26  LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFG----ASWHAVV 78



 Score = 33.9 bits (74), Expect = 0.088
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLG 331
           H +VG  FG  +THE R+ +Y + G
Sbjct: 75  HAVVGEGFGFEITHEVRNLLYMFFG 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,915,379
Number of Sequences: 59808
Number of extensions: 318411
Number of successful extensions: 784
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)