Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0699
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.67 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.88 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   4.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 304 SPLHLLLPGDSGLYCSLRAVRPFSITSIFLLAADAV 411
           S L   LP DSG   SL      S+T  FLL A+ +
Sbjct: 254 SVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEII 289


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 60   VHLSKQKQTQDKMC-DRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFD 236
            +H ++ K+T DK+C   + V+  A     ++  +       +EK     + A  +KK  +
Sbjct: 1689 IHRTQVKETDDKICFTMRPVVSCASGCTAVETKSKPYKFHCMEK----NEAAMKLKKRIE 1744

Query: 237  KKYNP 251
            K  NP
Sbjct: 1745 KGANP 1749


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 322 LPGDSGLYCSLRAVRPFSITSIFLLAADAV 411
           LP DSG   SL      S+T  FLL A+ +
Sbjct: 264 LPSDSGEKVSLSISILLSLTVFFLLLAEII 293


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 322 LPGDSGLYCSLRAVRPFSITSIFLLAADAV 411
           LP DSG   SL +    S+T  FLL A+ +
Sbjct: 273 LPSDSGEKVSLCSSILLSLTVFFLLLAEII 302


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -1

Query: 182 ERLSCTVNSILLHLFAH 132
           ER+ C+ NS++ H++ +
Sbjct: 42  ERVYCSRNSLMTHIYTY 58


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 304 SPLHLLLPGDSGLYCSLRAVRPFSITSIFLLAADAVLSDG*PLQIL 441
           S L   LP DSG   +L      S T  FLL ++ + S    L +L
Sbjct: 253 SVLAFYLPADSGEKIALCINILLSQTMFFLLISEIIPSTSLALPLL 298


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 431 CRFSCXARAVVHSHR*LAARVXQXEAG*C 517
           C +SC  +++++SH    + V Q     C
Sbjct: 22  CSYSCVNKSMLNSHLKSHSNVYQYRCANC 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,840
Number of Sequences: 438
Number of extensions: 2701
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)