Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0699
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15930.1 68417.m02419 dynein light chain, putative similar to... 70 1e-12
At4g27360.1 68417.m03927 dynein light chain, putative similar to... 48 3e-06
At1g52250.1 68414.m05895 dynein light chain type 1 family protei... 46 1e-05
At3g16120.1 68416.m02036 dynein light chain, putative similar to... 44 9e-05
At1g23220.1 68414.m02904 dynein light chain type 1 family protei... 43 2e-04
At5g20110.1 68418.m02394 dynein light chain, putative similar to... 40 8e-04
At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid t... 28 3.6
At4g29130.1 68417.m04169 hexokinase 1 (HXK1) identical to hexoki... 27 6.2
At2g37010.1 68415.m04539 ABC transporter family protein contains... 27 8.3
>At4g15930.1 68417.m02419 dynein light chain, putative similar to
dynein light chain 2 [Mus musculus] GI:15545995;
contains Pfam profile PF01221: Dynein light chain type 1
Length = 103
Score = 69.7 bits (163), Expect = 1e-12
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 5/91 (5%)
Frame = +3
Query: 105 RKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTGIASWVVILA 284
++AVIK+ADM ++MQ++A++ A A EK+++EKDIA IKKEFDKK+ A+W I+
Sbjct: 18 KRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHG----ATWHCIVG 73
Query: 285 RM*HTRLATSSTSTW-----GQWAILLFKSG 362
R T T+ + Q A+LLFKSG
Sbjct: 74 RN-FGSYVTHETNHFVYFYLDQKAVLLFKSG 103
>At4g27360.1 68417.m03927 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 103
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Frame = +3
Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEK--DIAAFIKKEFDKKY 245
M + KAV+ + DM + M++DA+ A++AL+ F++ + IA FIKKEFD+ Y
Sbjct: 1 MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSY 52
Score = 34.7 bits (76), Expect = 0.041
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 260 CIVGRNFGSYVTHETRHFIYFYLGTV 337
CIVG +FGS+VTH + FI+F +G++
Sbjct: 58 CIVGTHFGSFVTHCSGCFIHFSVGSL 83
>At1g52250.1 68414.m05895 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 94
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Frame = +3
Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKY 245
M + KA+++++DM +MQ A+ A+QAL+ F++ K IA IKKEFD++Y
Sbjct: 1 MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERY 52
Score = 35.9 bits (79), Expect = 0.018
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 260 CIVGRNFGSYVTHETRHFIYFYLGTVGY 343
C+VG NFG + TH FIYF L T+ +
Sbjct: 58 CVVGSNFGCFFTHSKGTFIYFQLETLKF 85
>At3g16120.1 68416.m02036 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 93
Score = 43.6 bits (98), Expect = 9e-05
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +3
Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDKKY 245
M + KA ++ DM +MQ A+ A+Q+L+ F++ IAA IKKEFD++Y
Sbjct: 1 MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERY 52
Score = 41.1 bits (92), Expect = 5e-04
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 260 CIVGRNFGSYVTHETRHFIYFYLGTVGY 343
C+VG NFG + TH FIYF+LGT+ +
Sbjct: 58 CVVGTNFGCFFTHSKGTFIYFHLGTLNF 85
>At1g23220.1 68414.m02904 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 129
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +2
Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGTV 337
HCIVG +FGSYVTH T F+YF + V
Sbjct: 88 HCIVGTSFGSYVTHSTGGFLYFQIDKV 114
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 60 VHLSKQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKD---IAAFIKKE 230
+ K K+ QD+ + ++ +DM Q A + + L + D +A +KK+
Sbjct: 19 IQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKD 78
Query: 231 FDKKYNP 251
FD Y P
Sbjct: 79 FDSAYGP 85
>At5g20110.1 68418.m02394 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 209
Score = 40.3 bits (90), Expect = 8e-04
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 257 HCIVGRNFGSYVTHETRHFIYF 322
HCIVG +FGS+VTH T FIYF
Sbjct: 168 HCIVGSSFGSFVTHSTGCFIYF 189
Score = 34.7 bits (76), Expect = 0.041
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 126 ADMSEEMQQDAVDCATQ---ALEKFNIEKDIAAFIKKEFDKKYNP 251
ADM MQ A CA +LEKF+ K +A +KKEFDK Y P
Sbjct: 122 ADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGYGP 165
>At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid
transfer protein (LTP)-related similar to geranyl
diphosphate synthase large subunit [Mentha x piperita]
GI:6449052
Length = 205
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -2
Query: 235 SNSFLMNAAMSFSML--NFSSA*VAQSTASCCISSLMS 128
SNSFL++AA+ FS+L N ++ +AQ C S L S
Sbjct: 3 SNSFLISAALIFSLLSSNSPTSILAQINTPCSPSMLSS 40
>At4g29130.1 68417.m04169 hexokinase 1 (HXK1) identical to
hexokinase 1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 496
Score = 27.5 bits (58), Expect = 6.2
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = +3
Query: 120 KNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEF-----DKKYNPTGIASWVVILA 284
K + E + QD V +ALE+ ++ IAA + + YNP +A+ VIL
Sbjct: 195 KGFSIEEAVGQDVVGALNKALERVGLDMRIAALVNDTVGTLAGGRYYNPDVVAA--VILG 252
Query: 285 RM*HTRLATSSTSTWGQWAILLFKSG 362
+ +T+ +W LL KSG
Sbjct: 253 TGTNAAYVERATAI-PKWHGLLPKSG 277
>At2g37010.1 68415.m04539 ABC transporter family protein contains
ABC transporter domain, Pfam:PF00005
Length = 1063
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 488 WLLATYGNVPQPEXRMRICKGYPSDNTASA 399
W+L + P P ++ C G PS +T SA
Sbjct: 738 WML--HNGYPVPHDMLKFCDGLPSSSTGSA 765
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,989,835
Number of Sequences: 28952
Number of extensions: 211537
Number of successful extensions: 551
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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