Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0695
         (369 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   9.2  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    20   9.2  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    20   9.2  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -2

Query: 233 RCRKCSFLCV 204
           +C KC + CV
Sbjct: 260 QCNKCDYTCV 269


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -2

Query: 233 RCRKCSFLCV 204
           +C KC + CV
Sbjct: 18  QCNKCDYTCV 27


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 190 EMKQMTQRKLHFL 228
           + K+MT++ +HFL
Sbjct: 76  KQKEMTKKVIHFL 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,782
Number of Sequences: 336
Number of extensions: 984
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7616520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)