Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0694
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)                      131   4e-31
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  29   3.4  
SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19)       28   5.9  
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)                   28   5.9  

>SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)
          Length = 767

 Score =  131 bits (317), Expect = 4e-31
 Identities = 57/81 (70%), Positives = 70/81 (86%)
 Frame = +2

Query: 266 MNISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPY 445
           + +SE ISE DL+ R+R I++ N+IWRSYIGMGY++C VP  I+RN+ ENPGWTT YTPY
Sbjct: 20  LQLSEAISEPDLLSRLRQISKGNQIWRSYIGMGYYSCHVPTTILRNILENPGWTTPYTPY 79

Query: 446 QPEVAQGRLESLLNYQTMVSD 508
           QPE+AQGRLESLLN+QTMVSD
Sbjct: 80  QPELAQGRLESLLNFQTMVSD 100



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = +1

Query: 508 LTGLDVANASLLDEGTAAAEALSLCH 585
           LTGLD+ANASLLDE TAAAEA++LC+
Sbjct: 101 LTGLDIANASLLDEATAAAEAMALCY 126


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 182 YYVRFIRIQEFRPVNQ*CSTKEDSIQGLMNISEPISEYDLIE 307
           YYV   ++ E R +++    +ED +Q L++ S+PI   +L+E
Sbjct: 408 YYVTTYQM-ELRKIHRDARAEEDRLQHLLDESDPIQTEELVE 448


>SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 182 YYVRFIRIQEFRPVNQ*CSTKEDSIQGLMNISEPISEYDLIE 307
           YYV   ++ E R +++    +ED +Q L++ S+PI   +L+E
Sbjct: 107 YYVTTYQM-ELRKIHRDARAEEDRLQHLLDESDPIQTEELVE 147


>SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19)
          Length = 381

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 225 LTGLNSCILINLT**LYPDPLGQCVYSG 142
           +T +NSCI ++LT  +  D +G  +YSG
Sbjct: 250 MTAINSCIEVDLTGQVVSDSIGTRMYSG 277


>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
          Length = 665

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 524 LLMLPYWMRVRLLPKHFHCVTGITNEQSSSCPKRLHPQTLAVVHT 658
           L + P W  +     H +    I    SSS P R H  T A+++T
Sbjct: 237 LALAPPWRIIHNYRHHLYTTVIIYTPPSSSIPHRHHLYTTAIIYT 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,245,637
Number of Sequences: 59808
Number of extensions: 455755
Number of successful extensions: 1192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)