Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0694
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...   107   9e-24
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...   101   6e-22
At3g19780.1 68416.m02504 expressed protein                             32   0.29 
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil...    30   1.6  
At2g41760.1 68415.m05162 expressed protein                             29   2.1  
At4g01980.1 68417.m00264 hypothetical protein contains similarit...    28   6.3  
At2g22710.1 68415.m02690 myb family protein                            28   6.3  
At1g50630.1 68414.m05690 expressed protein                             28   6.3  

>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score =  107 bits (256), Expect = 9e-24
 Identities = 47/91 (51%), Positives = 68/91 (74%)
 Frame = +2

Query: 236 STKEDSIQGLMNISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFEN 415
           S + DS++      E ++E  +IE +  +A KN++++S+IGMGY+N  VP  I+RN+ EN
Sbjct: 119 SIRLDSMKFSGIFDEGLTESQMIEHMSDLASKNKVFKSFIGMGYYNTHVPPVILRNIMEN 178

Query: 416 PGWTTQYTPYQPEVAQGRLESLLNYQTMVSD 508
           P W TQYTPYQ E++QGRLESLLNYQT+++D
Sbjct: 179 PAWYTQYTPYQAEISQGRLESLLNYQTVITD 209



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/39 (56%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
 Frame = +1

Query: 508 LTGLDVANASLLDEGTAAAEALSLCHR--HNKRTKFVVS 618
           LTGL ++NASLLDEGTAAAEA+++C+     K+  FV++
Sbjct: 210 LTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTFVIA 248



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 96  TQSTRSDTLFPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQ 254
           T+S   D L P    FP RH      +   M +  G+ +L+ L +  VPK I+
Sbjct: 70  TRSISVDALKPSDT-FPRRHNSATPDEQAQMANYCGFDNLNTLIDSTVPKSIR 121


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score =  101 bits (241), Expect = 6e-22
 Identities = 41/75 (54%), Positives = 61/75 (81%)
 Frame = +2

Query: 284 ISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPYQPEVAQ 463
           ++E  +I+ +  +A KN++++S+IGMGY+N  VP  I+RN+ ENP W TQYTPYQ E++Q
Sbjct: 129 LTESQMIQHMVDLASKNKVFKSFIGMGYYNTHVPTVILRNIMENPAWYTQYTPYQAEISQ 188

Query: 464 GRLESLLNYQTMVSD 508
           GRLESLLN+QT+++D
Sbjct: 189 GRLESLLNFQTVITD 203



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/39 (56%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
 Frame = +1

Query: 508 LTGLDVANASLLDEGTAAAEALSLCHR--HNKRTKFVVS 618
           LTGL ++NASLLDEGTAAAEA+++C+     K+  FV++
Sbjct: 204 LTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTFVIA 242



 Score = 32.3 bits (70), Expect = 0.29
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 84  RHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQ 254
           RH  T+S   D + P    FP RH      +   M    G+  +D L +  VPK I+
Sbjct: 61  RHQQTRSISVDAVKPSDT-FPRRHNSATPDEQTHMAKFCGFDHIDSLIDATVPKSIR 116


>At3g19780.1 68416.m02504 expressed protein
          Length = 1014

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 521 TLLMLPYWMRVRL-LPKHFHCVTGITNEQSSSCPKRLHPQTLAVVHT 658
           TLL+LP+ + V + LP   H    I  EQ+ S   RLHP  L  V T
Sbjct: 5   TLLLLPFLVFVSIILPSSCHGEWEILTEQNFSSQIRLHPHVLLFVTT 51


>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105|SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
           PF00956: Nucleosome assembly protein (NAP)
          Length = 256

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 355 DVRSPYFILFSYQPNPFY 302
           DV+S Y I FS+ PNPF+
Sbjct: 112 DVKSGYSITFSFNPNPFF 129


>At2g41760.1 68415.m05162 expressed protein
          Length = 221

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 398 RNMFENPG-WTTQYTPYQPEVAQ-GRLESLLNYQTM 499
           R+M E  G WT Q  PY+P VAQ G L +L  Y  M
Sbjct: 147 RHMKEPDGSWTAQPPPYEPIVAQDGILHNLSEYIAM 182


>At4g01980.1 68417.m00264 hypothetical protein contains similarity
           to hypothetical proteins of [Arabidopsis thaliana]
          Length = 302

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 239 TKEDSIQGLMNISEPISEYDLIERVRLIAE 328
           +K   ++ L++ +EP+SE DL+ + +LI E
Sbjct: 270 SKNQMLESLLSRTEPLSECDLVLKKKLIEE 299


>At2g22710.1 68415.m02690 myb family protein
          Length = 391

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 239 TKEDSIQGLMNISEPISEYDLIERVRLIAE 328
           +K   ++ L++ +EP+SE DL+ + +LI E
Sbjct: 359 SKNQMLESLLSRTEPLSECDLVLKKKLIEE 388


>At1g50630.1 68414.m05690 expressed protein
          Length = 453

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 339 ISFFSAINLTRSIRSYSLMGSLIFIRPWIESSLVLHHWLTGLNSCILI 196
           ++  S + LTR +  Y L   L F + W ES  V  ++   LN+ + I
Sbjct: 103 VATVSFLCLTRFVSKYGLRRFLFFDKLWDESETVRRNYTNQLNTSLHI 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,990
Number of Sequences: 28952
Number of extensions: 315929
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)