Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0693
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p... 77 2e-15
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 27 1.8
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 26 4.1
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 5.5
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.5
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 26 5.5
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 5.5
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 7.2
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 9.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.5
>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 85
Score = 77.4 bits (182), Expect = 2e-15
Identities = 35/48 (72%), Positives = 42/48 (87%)
Frame = +3
Query: 111 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPT 254
AVIK DMSE+MQQ+A+ A QA+EKF IEKDIAAFIK+EFDKK++PT
Sbjct: 2 AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPT 49
Score = 59.3 bits (137), Expect = 5e-10
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +2
Query: 257 HCIVGRNFGSYVTHETRHFIYFYLG 331
HCIVGRNFGS+VTHE+RHFIYFYLG
Sbjct: 51 HCIVGRNFGSFVTHESRHFIYFYLG 75
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 459 PQPEPRMRICKGYPSDNTASAA-NKKIEVMLNGLTALKEQYSH 334
PQ EP + Y N A N+++EV+ + L+ LKEQ +H
Sbjct: 307 PQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITH 349
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 223 LMNAAMSFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCFC 74
L N SF + N + A+ C+SSL+ L L W+C C
Sbjct: 139 LKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKC 188
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 72 KQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE 200
+QKQ + + RK K M+E+ + + + L K N+E
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVE 569
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 183 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 70
++L L + QH+ L SC ++L +L H CL F++ S
Sbjct: 39 KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 516 WCERFSSECESGCTVFTYTVYLIXNSQCWTLTAVL 620
W RFS C +FT Y I S W A+L
Sbjct: 199 WLIRFSFRKSIICCLFTPFSYAILRSYIWRFAALL 233
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 409 YCVRC*QKNRSDAKWSNRS 353
YC+RC ++ D+ W++RS
Sbjct: 539 YCLRCVYDDKMDSLWNSRS 557
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 75 QKQTQD--KMCDRKAVIKNADMSEEMQQDAVDCATQALEKF 191
+K+T + KM K ++K AD+S +Q+D + T+ LEK+
Sbjct: 521 EKKTDEPVKMRKVKKLVKVADLSVSVQEDRL--PTEVLEKY 559
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 185 LERLSCTVNSILLHLFAHVSILYDCF 108
LE L+ +N + +FA++ + DCF
Sbjct: 565 LEFLNSCINRCISRVFAYLDVCVDCF 590
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 9.5
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = -3
Query: 337 PLSQVEVDEVASLVCHIRAKITTHDAMPVGLYFLSNSFLMNAAMSFSMLNFSSA*VAQST 158
P +V ++E+ L IR I ++ P L+ N F + + LNF S ++
Sbjct: 22 PSEKVLLEELRKLRGFIRNDIPSN-FFPQ-LFITDNGFAA-IKKAVTKLNFQSL-LSLDI 77
Query: 157 ASCCISSLMSAFFMTALRSHILS 89
CC+ L A T LRS +LS
Sbjct: 78 FECCLQILGIATSYTILRSWLLS 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,716
Number of Sequences: 5004
Number of extensions: 51118
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -