Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0693
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15930.1 68417.m02419 dynein light chain, putative similar to...    66   2e-11
At4g27360.1 68417.m03927 dynein light chain, putative similar to...    48   4e-06
At1g52250.1 68414.m05895 dynein light chain type 1 family protei...    46   2e-05
At3g16120.1 68416.m02036 dynein light chain, putative similar to...    44   1e-04
At5g20110.1 68418.m02394 dynein light chain, putative similar to...    42   4e-04
At1g23220.1 68414.m02904 dynein light chain type 1 family protei...    42   4e-04
At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid t...    28   4.7  

>At4g15930.1 68417.m02419 dynein light chain, putative similar to
           dynein light chain 2 [Mus musculus] GI:15545995;
           contains Pfam profile PF01221: Dynein light chain type 1
          Length = 103

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 31/61 (50%), Positives = 46/61 (75%)
 Frame = +3

Query: 105 RKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTGIASWVVILA 284
           ++AVIK+ADM ++MQ++A++ A  A EK+++EKDIA  IKKEFDKK+     A+W  I+ 
Sbjct: 18  KRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHG----ATWHCIVG 73

Query: 285 R 287
           R
Sbjct: 74  R 74



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQ 334
           HCIVGRNFGSYVTHET HF+YFYL Q
Sbjct: 69  HCIVGRNFGSYVTHETNHFVYFYLDQ 94


>At4g27360.1 68417.m03927 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 103

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
 Frame = +3

Query: 96  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEK--DIAAFIKKEFDKKY 245
           M + KAV+ + DM + M++DA+  A++AL+ F++ +   IA FIKKEFD+ Y
Sbjct: 1   MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSY 52



 Score = 33.9 bits (74), Expect = 0.095
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = +2

Query: 260 CIVGRNFGSYVTHETRHFIYFYLG 331
           CIVG +FGS+VTH +  FI+F +G
Sbjct: 58  CIVGTHFGSFVTHCSGCFIHFSVG 81


>At1g52250.1 68414.m05895 dynein light chain type 1 family protein
           similar to SP|O02414 Dynein light chain LC6, flagellar
           outer arm {Anthocidaris crassispina}; contains Pfam
           profile PF01221: Dynein light chain type 1
          Length = 94

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
 Frame = +3

Query: 96  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKY 245
           M + KA+++++DM  +MQ  A+  A+QAL+ F++   K IA  IKKEFD++Y
Sbjct: 1   MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERY 52



 Score = 33.9 bits (74), Expect = 0.095
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 260 CIVGRNFGSYVTHETRHFIYFYL 328
           C+VG NFG + TH    FIYF L
Sbjct: 58  CVVGSNFGCFFTHSKGTFIYFQL 80


>At3g16120.1 68416.m02036 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 93

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
 Frame = +3

Query: 96  MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDKKY 245
           M + KA ++  DM  +MQ  A+  A+Q+L+ F++     IAA IKKEFD++Y
Sbjct: 1   MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERY 52



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 260 CIVGRNFGSYVTHETRHFIYFYLG 331
           C+VG NFG + TH    FIYF+LG
Sbjct: 58  CVVGTNFGCFFTHSKGTFIYFHLG 81


>At5g20110.1 68418.m02394 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 209

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/41 (56%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQWLYCSL--RAVRPFS 373
           HCIVG +FGS+VTH T  FIYF + + LY  L    VRP S
Sbjct: 168 HCIVGSSFGSFVTHSTGCFIYFSMDK-LYVLLFKTKVRPAS 207



 Score = 34.7 bits (76), Expect = 0.054
 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 126 ADMSEEMQQDAVDCATQ---ALEKFNIEKDIAAFIKKEFDKKYNP 251
           ADM   MQ  A  CA     +LEKF+  K +A  +KKEFDK Y P
Sbjct: 122 ADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGYGP 165


>At1g23220.1 68414.m02904 dynein light chain type 1 family protein
           similar to SP|O02414 Dynein light chain LC6, flagellar
           outer arm {Anthocidaris crassispina}; contains Pfam
           profile PF01221: Dynein light chain type 1
          Length = 129

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = +2

Query: 257 HCIVGRNFGSYVTHETRHFIYFYL 328
           HCIVG +FGSYVTH T  F+YF +
Sbjct: 88  HCIVGTSFGSYVTHSTGGFLYFQI 111



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +3

Query: 60  VHLSKQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKD---IAAFIKKE 230
           +   K K+ QD+  +    ++ +DM    Q  A   + + L     + D   +A  +KK+
Sbjct: 19  IQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKD 78

Query: 231 FDKKYNP 251
           FD  Y P
Sbjct: 79  FDSAYGP 85


>At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid
           transfer protein (LTP)-related similar to geranyl
           diphosphate synthase large subunit [Mentha x piperita]
           GI:6449052
          Length = 205

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -3

Query: 235 SNSFLMNAAMSFSML--NFSSA*VAQSTASCCISSLMS 128
           SNSFL++AA+ FS+L  N  ++ +AQ    C  S L S
Sbjct: 3   SNSFLISAALIFSLLSSNSPTSILAQINTPCSPSMLSS 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,792,244
Number of Sequences: 28952
Number of extensions: 268523
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)