Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0692
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0172 - 15082426-15082616,15084243-15084741                       28   4.9  
02_04_0648 - 24716249-24717841                                         27   8.6  

>03_03_0172 - 15082426-15082616,15084243-15084741
          Length = 229

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 424 QDVELKPWSSSWLSPAAVLK*YR*HLSLRPNITP 525
           QD      SS+W +P A  +  R  LSLRP  TP
Sbjct: 40  QDESEDVGSSTWTAPMATSRGVRFQLSLRPKETP 73


>02_04_0648 - 24716249-24717841
          Length = 530

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 584 PNPGNRIIQPFGVLESACDLGVILGRRLKCH 492
           P P N+ + P  VL +AC +GV L R + CH
Sbjct: 111 PAP-NQFVYPL-VLRAACAIGVQLVRSIHCH 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,119
Number of Sequences: 37544
Number of extensions: 249154
Number of successful extensions: 517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)