Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0692
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 203 FDCDSYLKFLD*NLVPNSAREKKYILL 123
           F C  +LK  D  +V  S RE  Y+LL
Sbjct: 673 FVCGVFLKHNDTPVVRASGRELSYVLL 699


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +1

Query: 172 SKNFKYESQSNEYARTNEPSCWSSKCSQ 255
           + N+KY   +N Y   N  + +++ C +
Sbjct: 326 NNNYKYNYNNNNYNNNNYNNNYNNNCKK 353


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 576 WEQDYPTFWCIGVC 535
           W+Q YP  W +G+C
Sbjct: 95  WQQ-YPWQWGLGIC 107


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 523 PKSHADSNTPK 555
           P+SH +SN PK
Sbjct: 231 PESHQNSNVPK 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,433
Number of Sequences: 438
Number of extensions: 2816
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)