Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0691
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 180 6e-46
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 172 2e-43
03_01_0092 - 731069-731434,731569-733080 29 2.1
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 29 2.8
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 29 3.7
03_05_0745 - 27346266-27346355,27346990-27347082,27347315-273474... 29 3.7
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 28 6.5
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367... 28 6.5
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 180 bits (439), Expect = 6e-46
Identities = 97/172 (56%), Positives = 117/172 (68%), Gaps = 3/172 (1%)
Frame = +1
Query: 37 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRXVRYLKNVIEKKECIPF 216
M +YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL + RYL++VI K+ IPF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 217 RRFNGGVGRCAQASSLAQHRVAGPRNPPNSSCSY*GTL---NQNADNKTLDVDRLVIDHI 387
RR+ GGVGR AQA S +H R P S+ L NA+ K LDVD L + HI
Sbjct: 61 RRYCGGVGRTAQAKS--RHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHI 118
Query: 388 QVNRAPCLRRRTYRAHGRINPYMSSXCHIEVCLSEREDAVVREPLLMMPQRR 543
QVN+A RRRTYRAHGRINPYMSS CHIE+ LSE+E+ V +EP + R+
Sbjct: 119 QVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQIAARK 170
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 172 bits (419), Expect = 2e-43
Identities = 94/183 (51%), Positives = 114/183 (62%), Gaps = 13/183 (7%)
Frame = +1
Query: 37 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRXVRYL 180
MG+YS EP NP KS KA G +LRVHFK NT ETA A+RK+PL + RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 181 KNVIEKKECIPFRRFNGGVGRCAQASSLAQH-RVAGPRNPPNSSCSY*GTLNQNADNKTL 357
++VI K+ IPFRR+ GGVGR AQ S + + P NAD K L
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGL 120
Query: 358 DVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSXCHIEVCLSEREDAVVREPLLMMPQ 537
DVD L + HIQVN+A RRRTYRAHGRINPYMSS CH+E+ LSE+E+AV +EP +
Sbjct: 121 DVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180
Query: 538 RRK 546
RR+
Sbjct: 181 RRQ 183
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 177 PQKRD*KERVYSIPSLQRRRWSLCSSKQFGTTQGRWPKKSAEFLLQLLRNAESK 338
PQ ++ V + P Q + + S G + RWPK L+QL E++
Sbjct: 284 PQSKEANTVVRAAPPPQEQHDTAASGGGGGASSSRWPKAEVHALIQLRTELETR 337
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 406 RARDLPECGR*LACQRPKFCCQRFDSAFLNNCKRNSADFLGQRPCV 269
+ DL EC LAC P C+ + CK N G+ C+
Sbjct: 245 KCEDLDECKEKLACTCPNCHCKNTWGNYECKCKGNQIYIRGEDTCI 290
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 127 ETAMAIRKMPLRRXVRYLKNVIEKKECIPFRRFNGGVGRCAQASSLAQHRVAG 285
E A +++ + L Y KN++ EC+P R+ GG+ +A A+ +AG
Sbjct: 416 ENAPSLKCITLDTANFYDKNLLTMGECLPMRK--GGILEARKAFDAAKRYIAG 466
>03_05_0745 -
27346266-27346355,27346990-27347082,27347315-27347404,
27347753-27347804,27347894-27348000,27348209-27348313,
27348383-27348512,27348861-27348991,27349348-27349449,
27349557-27349655,27349771-27350040
Length = 422
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 241 RCAQASSLAQHRVAGPRNPPNSS 309
RCA ASSLA H VA PR+P ++
Sbjct: 59 RCALASSLAAHHVA-PRDPARAA 80
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +1
Query: 34 IMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRXVRYLKNVIEKKECIP 213
++ + + + K C RGS +R+H KN + P RR + +++ + I
Sbjct: 530 VLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPSRRLPVVVSGLLQHESKIS 589
Query: 214 FRRFN 228
F+
Sbjct: 590 VLHFS 594
>03_02_0983 -
12933082-12934884,12935669-12936487,12936754-12936795,
12937116-12937244
Length = 930
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 135 NGNQKDAAPSXCSLPQKRD*KERVYSIPSLQRRRWSLCSSKQ 260
NGN D + PQK ++R Y P +RRR + CS+ Q
Sbjct: 637 NGNG-DTIGATSFFPQKTKIEKRKYLSPVTKRRRLTSCSNDQ 677
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,116,567
Number of Sequences: 37544
Number of extensions: 326688
Number of successful extensions: 827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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