Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0691
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              161   3e-40
SB_49386| Best HMM Match : DUF1471 (HMM E-Value=3.5)                   30   1.6  
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              28   5.0  
SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38)              27   8.7  
SB_1911| Best HMM Match : AFG1_ATPase (HMM E-Value=1.8e-26)            27   8.7  
SB_30468| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  161 bits (392), Expect = 3e-40
 Identities = 79/139 (56%), Positives = 98/139 (70%), Gaps = 2/139 (1%)
 Frame = +1

Query: 37  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRXVRYLKNVIEKKECIPF 216
           M RY+ +P+NP KSCKARGSNLRVH+KNT+E AMAI+ M +R+  RYLK+V  KK+ +PF
Sbjct: 1   MTRYATDPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPF 60

Query: 217 RRFNGGVGRCAQASSLAQHRVAG--PRNPPNSSCSY*GTLNQNADNKTLDVDRLVIDHIQ 390
           R++NGGVGR AQA +L      G  P+               NA+ K LDVD LV++HIQ
Sbjct: 61  RKYNGGVGRKAQAKNLKVPGSQGRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQ 120

Query: 391 VNRAPCLRRRTYRAHGRIN 447
           VN AP +RRRTYRAHGRIN
Sbjct: 121 VNEAPSMRRRTYRAHGRIN 139


>SB_49386| Best HMM Match : DUF1471 (HMM E-Value=3.5)
          Length = 155

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -2

Query: 393 YLNVVDN*PVNVQSFVVSVLIQRSSITARGIRRISWASDPVLCQTACLSTATNAAVEATE 214
           YLN+    P N  + V SVL    S++  G    + AS   L  TA    +TNA+ E  +
Sbjct: 12  YLNITATTPTNTSAAVSSVLSAAQSLSESGDAAAAVAS---LASTASYLASTNASAEQVQ 68


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 175 YLKNVIEKKECIPFRRFNGGVGRCAQASSLAQHRVAGPRNPPNSSCSY 318
           Y  +  + ++C P+R +     R  Q +   QHR   P  PP+   +Y
Sbjct: 498 YRTDSTQHRQCAPYRLYPAQTVRTVQTT---QHRQCAPYRPPSIDSAY 542


>SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38)
          Length = 283

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 471 VAGRRHVGVDATVSTVCTSA*AGRAIYLNVVDN*PVNVQSF--VVSVLIQRSSITARGIR 298
           VAGR   G  + V+++     A   I+++ VD   +N+QS   VVSV+ Q  ++ +  IR
Sbjct: 86  VAGRTGAGKSSIVASLMRMPEASTGIHIDDVDIRGLNLQSTRQVVSVIQQNPTLLSGTIR 145


>SB_1911| Best HMM Match : AFG1_ATPase (HMM E-Value=1.8e-26)
          Length = 392

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 415 CVGRARDLPECGR*LACQRPKFCCQRFDSAFLNNCKR--NSADFL 287
           C  RARD+P  G       P+ C +  D  F   C R   +AD+L
Sbjct: 222 CKTRARDIPVLGGARTLHAPRTCDRVADFTFEELCARPLGAADYL 266


>SB_30468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 226 NGGVGRCAQASSLAQHRVAGPRNPPNSSCSY*GTLNQNADNKTLDVDR 369
           N G+   A   S++      PR+P +S+CSY   +  +  N +L+  R
Sbjct: 109 NDGMSPIANIHSVSVSASINPRSPSSSNCSYVNDIELSPLNGSLNDSR 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,537,452
Number of Sequences: 59808
Number of extensions: 391805
Number of successful extensions: 1037
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)