Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0691
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   186   1e-47
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    94   8e-41

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  186 bits (453), Expect = 1e-47
 Identities = 94/172 (54%), Positives = 113/172 (65%)
 Frame = +1

Query: 46  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRXVRYLKNVIEKKECIPFRRF 225
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRR   +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 226 NGGVGRCAQASSLAQHRVAGPRNPPNSSCSY*GTLNQNADNKTLDVDRLVIDHIQVNRAP 405
           +GG+GR AQ       +   P    +           NA+ K LDVD LVI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 406 CLRRRTYRAHGRINPYMSSXCHIEVCLSEREDAVVREPLLMMPQRRKSFQEK 561
            LRRRTYRAHGRINPYMSS CHIEV L+E+ED V +      P+ +K  + K
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSKPTDDAAPKVKKESKRK 177


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 93.9 bits (223), Expect(2) = 8e-41
 Identities = 46/75 (61%), Positives = 54/75 (72%)
 Frame = +1

Query: 337 NADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSXCHIEVCLSEREDAVVRE 516
           NA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSS CHIEV L+E+ED V + 
Sbjct: 75  NAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSKP 134

Query: 517 PLLMMPQRRKSFQEK 561
                P+ +K  + K
Sbjct: 135 TDDAAPKVKKESKRK 149



 Score = 91.1 bits (216), Expect(2) = 8e-41
 Identities = 41/60 (68%), Positives = 48/60 (80%)
 Frame = +1

Query: 46  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRXVRYLKNVIEKKECIPFRRF 225
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRR   +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,524,785
Number of Sequences: 27780
Number of extensions: 277742
Number of successful extensions: 670
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)