SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0688
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707...    63   2e-10
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473...    62   2e-10
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523...    61   6e-10
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607...    58   4e-09
02_05_0228 - 27010982-27011272,27011401-27011506,27011616-270117...    56   3e-08
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026...    50   2e-06
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351...    44   1e-04
02_02_0241 - 8204430-8205398                                           28   4.9  
08_01_0637 + 5537421-5539547                                           28   6.5  
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78...    27   8.6  
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73...    27   8.6  
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731...    27   8.6  

>01_06_0670 +
           31069976-31070073,31070461-31070581,31070669-31070743,
           31070863-31071014,31071171-31071276,31071409-31071474,
           31071562-31071657,31071764-31071835,31071925-31072008,
           31072147-31072245,31072721-31072768,31072857-31072910,
           31072991-31073089,31073182-31073271,31073371-31073448,
           31073584-31073658,31073806-31073896,31074014-31074142,
           31074235-31074323
          Length = 573

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 35/83 (42%), Positives = 51/83 (61%)
 Frame = +3

Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGSRLQETERIXYHYFMIKDTYLI 527
           +LQ+RNE+LF+ LL  ++E+ +P+VYTPTVG ACQK+GS  +  + + Y     K   L 
Sbjct: 96  DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGL-YISLKEKGRILE 154

Query: 528 F*RTGPEHAXPRXRFLQTGERIL 596
             R  PE +  +   +  GERIL
Sbjct: 155 LLRNWPEKSI-QVIVVTDGERIL 176



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 83  GLQPKYLDQRRNMHE-ITGNIICPNMLRGIDHIKDPRLNKGLAFTLEE 223
           G++  Y + R    + IT   +C  +  G   ++DPR NKGL+FT +E
Sbjct: 8   GVEDAYGEDRATEDQPITPWAVC--VASGHSLLRDPRHNKGLSFTEKE 53


>01_01_0629 -
           4738519-4738607,4738700-4738828,4738921-4739011,
           4739103-4739177,4739529-4739618,4739742-4739840,
           4739934-4739987,4740084-4740131,4740232-4740330,
           4740458-4740541,4740650-4740721,4740812-4740907,
           4741012-4741077,4741148-4741253,4741350-4741501,
           4741634-4741708,4741792-4741912,4742968-4743209,
           4743328-4743381
          Length = 613

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 35/83 (42%), Positives = 51/83 (61%)
 Frame = +3

Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGSRLQETERIXYHYFMIKDTYLI 527
           +LQ+RNE+LF+ LL  ++E+ +P+VYTPTVG ACQK+GS  ++ + + Y     K   L 
Sbjct: 162 DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRQPQGL-YVSLKDKGKVLD 220

Query: 528 F*RTGPEHAXPRXRFLQTGERIL 596
             R  PE    +   +  GERIL
Sbjct: 221 VLRNWPERNI-QVIVVTDGERIL 242


>05_01_0585 -
           5237547-5237930,5237995-5238072,5238163-5238405,
           5238515-5238661,5238780-5238863,5238969-5239040,
           5239153-5239248,5239345-5239410,5239537-5239642,
           5239749-5239900,5240238-5240433,5240791-5240879
          Length = 570

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 34/83 (40%), Positives = 51/83 (61%)
 Frame = +3

Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGSRLQETERIXYHYFMIKDTYLI 527
           +LQ+RNE+LF+ LL  ++E+ +P+VYTPTVG ACQK+GS  +  + + Y     K   L 
Sbjct: 93  DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGL-YISLKDKGKILE 151

Query: 528 F*RTGPEHAXPRXRFLQTGERIL 596
             +  PE +  +   +  GERIL
Sbjct: 152 VLKNWPERSI-QVIVVTDGERIL 173


>01_06_0551 +
           30159789-30159946,30160509-30160629,30160714-30160788,
           30160877-30161028,30161103-30161208,30161298-30161363,
           30161623-30161694,30161849-30161932,30162108-30162206,
           30162841-30162888,30162986-30163039,30163137-30163235,
           30163321-30163410,30163503-30163580,30163699-30163773,
           30163866-30163956,30164282-30164410,30164501-30164589
          Length = 561

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 33/83 (39%), Positives = 49/83 (59%)
 Frame = +3

Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGSRLQETERIXYHYFMIKDTYLI 527
           +LQ+ NE+LF+ LL  ++E+ +P+VYTPTVG ACQK+GS     + + Y     K   L 
Sbjct: 116 DLQEGNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFSRPQGL-YISLKEKGKILE 174

Query: 528 F*RTGPEHAXPRXRFLQTGERIL 596
             +  PE +  +   +  GERIL
Sbjct: 175 VLKNWPERSI-QVIVVTDGERIL 196


>02_05_0228 -
           27010982-27011272,27011401-27011506,27011616-27011767,
           27011919-27011930
          Length = 186

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 32/83 (38%), Positives = 49/83 (59%)
 Frame = +3

Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGSRLQETERIXYHYFMIKDTYLI 527
           E  +R+E+LF+ LL  ++E+ +P+VYTPTVG ACQK+GS  +  + + Y     K   L 
Sbjct: 2   EKGERSERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGL-YISLKDKGKILE 60

Query: 528 F*RTGPEHAXPRXRFLQTGERIL 596
             +  PE +  +   +  GERIL
Sbjct: 61  VLKNWPERSI-QVIVITDGERIL 82


>10_08_0551 +
           18702081-18702251,18702328-18702424,18702533-18702651,
           18702757-18702924,18703296-18703424,18703659-18703719,
           18703813-18703916,18704173-18704279,18704319-18704493,
           18704657-18704770,18704883-18704966,18705536-18705608,
           18705689-18705775,18705863-18705917,18706007-18706078,
           18706470-18706532,18706640-18706754,18706844-18706915
          Length = 621

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 23/55 (41%), Positives = 33/55 (60%)
 Frame = +3

Query: 351 LQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGSRLQETERIXYHYFMIKD 515
           L DRNE L++ +L  +I+ F PI+YTPTVGL C+ +    +    +   YF  KD
Sbjct: 119 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCENYSGLFRRPRGM---YFSAKD 170


>07_03_0474 +
           18534071-18534238,18534349-18534445,18534992-18535122,
           18535191-18535286,18535459-18535464,18535521-18535688,
           18535892-18536020,18536613-18536673,18536928-18537031,
           18537137-18537220,18538433-18538461,18538506-18538617,
           18539200-18539313,18539767-18539832,18540237-18540309,
           18540396-18540482,18540710-18540764,18540869-18540940,
           18541039-18541101,18541177-18541294,18541377-18541451
          Length = 635

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
 Frame = +3

Query: 351 LQDRNEKLFFS---LLDCDIEKFMPIVYTPTVGLACQKF 458
           L DRNE +++    L+D +IE+  PIVYTPTVGL CQ +
Sbjct: 154 LHDRNETMYYKAEVLID-NIEEHAPIVYTPTVGLVCQNY 191


>02_02_0241 - 8204430-8205398
          Length = 322

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 410 HAYCVHAYGWXG-VPEIWVSFTGDR 481
           H YCV+A  W    P+++ S +GDR
Sbjct: 153 HEYCVYAAAWSARHPDVFASASGDR 177


>08_01_0637 + 5537421-5539547
          Length = 708

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 325 KSSSYLSNEIWQNSNCSSWVLNLGPKVREYLKLXLFEREG 206
           K + ++  E W N+   SW + +   ++E L   + EREG
Sbjct: 395 KMARWMGVEDWWNTKAYSWPIPVSECIQELLVNQVLEREG 434


>12_01_0101 -
           779047-779298,779459-779711,779857-780005,780033-780281,
           780377-780571,780681-780788,780935-781156,781669-781986,
           781988-782615,783059-783135,783161-783267,783491-783619,
           783763-783820,783902-783984,784458-784539,784617-784693,
           784827-784910,784999-785068,785146-785234,785319-786008,
           786485-786797
          Length = 1410

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 577 CKNLLRGXACSGPVLQNIKYV 515
           CK+  RG  C  PV++ +K+V
Sbjct: 440 CKDTFRGRVCECPVVKGVKFV 460


>11_01_0101 -
           738305-738556,738723-738977,739306-739554,739649-739843,
           739953-740060,740184-740405,740806-741390,741495-741863,
           742423-742529,742755-742883,743027-743084,743166-743248,
           744115-744196,744274-744350,744477-744560,744649-744718,
           744796-744884,744965-745654,746127-746439
          Length = 1338

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 577 CKNLLRGXACSGPVLQNIKYV 515
           CK+  RG  C  PV++ +K+V
Sbjct: 440 CKDTFRGRVCECPVVKGVKFV 460


>03_02_0917 +
           12372122-12372422,12372487-12372524,12373103-12373186,
           12373796-12374504,12374641-12374729,12374834-12374903,
           12374977-12375060,12375097-12375239,12375337-12375418,
           12375605-12375687,12375769-12375835,12376287-12376376,
           12377631-12377737,12377862-12377969
          Length = 684

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 577 CKNLLRGXACSGPVLQNIKYV 515
           CK+  RG  C  PV++ +K+V
Sbjct: 505 CKDTFRGRVCECPVVKGVKFV 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,812,310
Number of Sequences: 37544
Number of extensions: 225694
Number of successful extensions: 408
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -