Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0688
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     29   2.9  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/37 (64%), Positives = 29/37 (78%)
 Frame = +3

Query: 351 LQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFG 461
           L +RNE LFF +L    E+ MPIVYTPTVGLAC+K+G
Sbjct: 125 LLERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYG 161



 Score = 35.9 bits (79), Expect = 0.025
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +2

Query: 158 LRGIDHIKDPRLNKGLAFTLEEXKL 232
           +RG D ++D  LNKGLAFTLEE ++
Sbjct: 60  IRGTDIMRDSHLNKGLAFTLEERQI 84


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +2

Query: 116 NMHEITGNIICPNML----RGIDHIKDPRLNKGLAFTLEEXK 229
           N H   G ++ P  +      +DH+KDP+    LA TL E K
Sbjct: 373 NGHHCGGTLVSPQWVVTAAHCVDHVKDPKNYNELAITLGEHK 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,976
Number of Sequences: 59808
Number of extensions: 275311
Number of successful extensions: 459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)