Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0680
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   0.85 
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   1.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   6.0  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 126 PHGSTFRLGADSGRFSQCCSRPPCEQR 206
           P+G T   G D G +   CS  PCE +
Sbjct: 88  PYGYT---GKDCGEYVDWCSTNPCENQ 111


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 250 LGPAFKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYA 429
           L   F   KD ++   D++   P+   + +  G   V G+ EEK  ++  +    TRR A
Sbjct: 75  LNEQFDVIKDNYRKVTDLKKRFPKLKVLLSVGGNADVSGQDEEKNIKYRNLLETTTRRLA 134


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 524  TAGGTSWVRLQTTHHLKTAGTXQIQPLQPS 435
            T  G   +R  TT+H++     +I   +PS
Sbjct: 954  TEAGVFTLRPATTYHIRIVAENEIGSSEPS 983


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 110 LSVLVASWINISAWG*LRKIFSVL 181
           LSV+ +S+++I+ W  L K F  +
Sbjct: 488 LSVIKSSFLDINTWKMLVKSFDAI 511


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,563
Number of Sequences: 336
Number of extensions: 3115
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)