Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0680
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    27   1.6  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   3.6  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   4.8  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.3  

>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -2

Query: 309 MLDVQVYLELILITFECWTKVSSRGSKVTPRAVV 208
           +L ++  +E I++T EC  K++  GS+ + R V+
Sbjct: 375 ILQIRAKVENIILTDECLDKLAQEGSRTSLRYVI 408


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
 Frame = -1

Query: 340 PF*QRFLPG----RNAGRPGLL----GTYPYHF*MLDQGLEPRQQGDATGGSILCSQ 194
           P+   F PG     N  RPG L    G +PY +   D G+ P  Q D +G S L  Q
Sbjct: 336 PYIPGFWPGIWTIGNLVRPGYLATSDGVWPYSYNSCDAGITP-NQSDPSGISYLGGQ 391


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 519 WRHLLGAITDNTPSEDSRDSTDSAV 445
           W H+ G IT+N  ++D+++   S V
Sbjct: 128 WSHIPGMITENQTNDDAKEVNGSDV 152


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 332 LKRRTATSWLKANTRRRKISMVTYRVNSLVATLCR 436
           LKR    S+  ANT  RK ++V       +AT C+
Sbjct: 126 LKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCK 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,915
Number of Sequences: 5004
Number of extensions: 46062
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)