Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0680
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.53
03_01_0491 + 3720842-3720958,3721904-3723109 30 1.2
08_02_0797 + 21307534-21307639,21307907-21308988,21309385-213094... 29 2.1
07_01_1127 + 10456895-10457388,10457488-10458112 29 2.8
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 3.7
09_03_0036 + 11772940-11773171,11774995-11775104 29 3.7
04_01_0252 - 3329712-3331061 29 3.7
12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817 28 6.5
10_08_0662 + 19662748-19662826,19662868-19663136,19664360-196645... 28 6.5
06_01_0121 - 932334-933074,933189-933272,934602-935006 28 6.5
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 27 8.6
07_03_0275 - 16160467-16160555,16160695-16160764,16160860-161609... 27 8.6
05_01_0396 - 3121189-3121226,3121552-3121609,3121938-3122060,312... 27 8.6
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 27 8.6
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 373 RVCLQPRCSRPPF*QRFLPGRNAGR 299
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 258 WTKVSSRGSKVTPRAVVFSAHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 103
W+ + +G KV A G GC K+F S+ +A+ H A +L F+
Sbjct: 379 WSLIGIKGDKV-------GADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>08_02_0797 +
21307534-21307639,21307907-21308988,21309385-21309432,
21309705-21310217
Length = 582
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/60 (35%), Positives = 25/60 (41%)
Frame = -2
Query: 318 RGEMLDVQVYLELILITFECWTKVSSRGSKVTPRAVVFSAHKGAGCSTEKIFRSQPQAEM 139
R +L V+L + L+ F CW VSSR A H I RS QAEM
Sbjct: 73 RRALLRYVVFLAVSLLAFSCWALVSSRIDGAVLAATAGGEHDD---HDGIIVRSSTQAEM 129
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 373 RVCLQPRCSRPPF*QRFLPGRNAGR 299
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 320 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 415
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 318 GRNLC*NGGRLHRG*RQTRGEERSAWLH 401
G+NL G+ H G R+ RG+ER LH
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLH 48
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 373 RVCLQPRCSRPPF*QRFLPGRNAGR 299
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>12_01_0636 + 5363436-5363848,5364041-5364354,5364792-5364817
Length = 250
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 193 LVSREYYRPWRHLAAAARDLGPA 261
+V ++ PW+H+AAA GPA
Sbjct: 129 VVDEDHLLPWQHIAAAVTSGGPA 151
>10_08_0662 +
19662748-19662826,19662868-19663136,19664360-19664571,
19665356-19665623,19665709-19666002
Length = 373
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +2
Query: 452 ESVESRLSSDGVLSVIAPRRCRQQWXVNARFRXPKPXPCARXEGPIQTA 598
E++ + S L V+ W VNA R P P PC GP TA
Sbjct: 24 ETIRNNGSPPVALLVLMAAAMVAGWFVNA-VRPPPPTPCGAEGGPPVTA 71
>06_01_0121 - 932334-933074,933189-933272,934602-935006
Length = 409
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 570 AHGSGLGXRNLAFTXHCWRHLLGAITDNTPSED--SRDSTDSAV 445
A G G R FT HCW + + + + E S+D+T++AV
Sbjct: 333 ARGVSAGRRGHNFTFHCWPVSISSYYEVSGGEASCSQDTTEAAV 376
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 265 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGY 399
+SDKDK N+D + A E + V+ E K +EK + H Y
Sbjct: 502 ESDKDKIMCNVDEKDIA-EHLRVRLKKEQEEKEHKKKEKAEAHLY 545
>07_03_0275 -
16160467-16160555,16160695-16160764,16160860-16160940,
16161160-16161252,16161430-16161510,16161605-16161694,
16161812-16161905,16162063-16162131,16162205-16162275,
16162545-16162628,16162755-16162847,16162995-16163102,
16163297-16163447,16164026-16164297,16165213-16165218,
16165389-16165613
Length = 558
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +1
Query: 133 DQHFGLGLTPEDFLSAAAGPLVSREYYRPWRHLAAAARDLGPAFKSDKDKFQVNL 297
D LG+T D +S A + +R + P R A A +DLG A D D+ +V L
Sbjct: 29 DTEEDLGVTDADEVSRAPRAMPTRIWVSPTRLPAVADKDLGVA---DADELKVFL 80
>05_01_0396 -
3121189-3121226,3121552-3121609,3121938-3122060,
3122170-3122323,3122590-3122678,3123185-3123410,
3123575-3123760,3123859-3123914,3124381-3124464,
3124547-3124627,3124773-3125045,3125143-3125263,
3126094-3126230,3126406-3126697,3127401-3127585
Length = 700
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 148 LGLTPEDFLSAAAGPLVSREYYRPWRHLAAAARDLGPA 261
LG T + L AA+ P +R RP AAA D+GPA
Sbjct: 10 LGFTGDFVLDAASSPSATRRR-RPVPPEAAAGGDVGPA 46
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +1
Query: 217 PWRHLAAAARDLGPAFKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ 390
P R LA + D + ++ D+ + EE+ V D +V+ G+H++++ +
Sbjct: 122 PRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGE 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,162,251
Number of Sequences: 37544
Number of extensions: 384579
Number of successful extensions: 1004
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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