Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0680
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78910.1 68414.m09199 pseudouridine synthase family protein l...    30   1.3  
At4g28010.1 68417.m04018 pentatricopeptide (PPR) repeat-containi...    28   5.4  
At2g43745.1 68415.m05438 expressed protein weak similarity to RT...    28   5.4  
At4g13700.1 68417.m02128 serine/threonine protein phosphatase fa...    27   9.5  
At2g01960.1 68415.m00131 expressed protein                             27   9.5  

>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 478

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 448 RYSXPAKRSDE*IDAICNHADLSSPRVCLQPR--CSRPPF*QRFLPGRNAGRPG 293
           RYS  A      I    N A L  P+    PR   S PPF    LPG+NAG  G
Sbjct: 19  RYSRVAPPPSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADG 72


>At4g28010.1 68417.m04018 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 704

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = -2

Query: 477 EDSRDSTDSAVTAXRQSVATSELTRYVTMLIFLLLVFAFNHDVAVRRFNRDFFRGEMLDV 298
           EDS     +AV+  +Q+V +     +    +   LV + NH++A       F+R +ML+ 
Sbjct: 48  EDSNPQLKNAVSVFQQAVDSGSSLAFAGNNLMAKLVRSRNHELAF-----SFYR-KMLET 101

Query: 297 QVYLELILIT--FECWTKVSSRG 235
             ++  + ++   EC+ ++   G
Sbjct: 102 DTFINFVSLSGLLECYVQMRKTG 124


>At2g43745.1 68415.m05438 expressed protein weak similarity to RTM1
           (GI:6503088) [Arabidopsis thaliana]
          Length = 158

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 585 GPSXLAHGSGLGXRNLAFTXHCWRHLLGAITDNTPSEDSRDSTDSAVTAXRQ 430
           G +   HG G+  RNL F  +   +++G  +DN P+    D  D A+   R+
Sbjct: 75  GSNFRVHGGGI--RNLTFRTNVGEYMIGRSSDNYPNHWKID-IDPAICDERE 123


>At4g13700.1 68417.m02128 serine/threonine protein phosphatase
           family protein contains Pfam domain PF00149: Ser/Thr
           protein phosphatase
          Length = 474

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 352 IVVEGKHEEKKDQHGYISRQFTRRYALPXGCNG 450
           +V+EG HE +    G   + ++ R+A+P   +G
Sbjct: 279 MVIEGNHEIEPQASGITFKSYSERFAVPASESG 311


>At2g01960.1 68415.m00131 expressed protein
          Length = 260

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 165 RFSQCCSRPPCEQRILPPVASPCC 236
           RF    + PP ++R+LP V + CC
Sbjct: 147 RFVNSYALPPYDRRLLPSVKTGCC 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,937,816
Number of Sequences: 28952
Number of extensions: 268829
Number of successful extensions: 600
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)