Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0679
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.075
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         33   0.23 
SB_24606| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 31   0.92 
SB_47470| Best HMM Match : Pou (HMM E-Value=1.3e-22)                   29   2.1  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   2.8  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     28   4.9  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              28   4.9  
SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3)                 28   6.5  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)                 28   6.5  
SB_39165| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   28   6.5  

>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 391 PPPADSVVLPAATDAVATRDASPPPPVATATRDXGPP 501
           PPP+     PAA    A   A+PPPP A       PP
Sbjct: 53  PPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPP 89


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 346 KSSLDRHSFKLARVRPPPADSVVLPAATDAVATRDASPPPPVATATRDXGPP 501
           +++  +   KL +V PPP    V+  ++ +V      PPPP+ + T    PP
Sbjct: 663 RTTTSQEQEKLKKVPPPPPPLPVIEGSSLSVPPPPPPPPPPLLSGTLPMPPP 714


>SB_24606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +1

Query: 307 LIFECFRF*VYFDKSSLDRHSFKLAR--VR---PPPADSVVLPAATDAVATRDASPPPPV 471
           L+F+  +  +Y+ +     HSF+  R  +R   P  + S +LP   D    R  +PPPP+
Sbjct: 176 LLFQPTKHRMYYARPLASPHSFESCRKAIREDWPYGSASALLPKKADTFERRQHAPPPPI 235


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 382 RVRPPPADSVVLPAATDAVATRDASPPPPVATATRDXGPP 501
           R    P+ +   P    + ATR   PPPP+A AT    PP
Sbjct: 115 RAPETPSQAPSPPPPPTSPATRAPPPPPPIAPATGGPPPP 154



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +1

Query: 391 PP--PADSVVLPAATDAVATRDASPPPPVATATRDXGPP 501
           PP  PA     P    A AT    PPPP+A AT    PP
Sbjct: 129 PPTSPATRAPPPPPPIAPATGGPPPPPPIAPATGGPPPP 167



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 391 PPPADSVVLPAATDAVATRDASPPPPVATATRDXGPP 501
           PPP      P A +  +   + PPPP + ATR   PP
Sbjct: 110 PPPP-----PRAPETPSQAPSPPPPPTSPATRAPPPP 141


>SB_47470| Best HMM Match : Pou (HMM E-Value=1.3e-22)
          Length = 441

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 379 ARVRPPPADSVVLPAATDAVATRDASPPPPVATATRDXGPPLRSVVXADAAAIYYCCSPV 558
           A ++ PPA+        D V    A P PPV+ A    GP  + V  A   ++ +  +PV
Sbjct: 352 AILQSPPANVTYAQVTEDTVVQSSAPPGPPVSYAVSFVGPGAQ-VEHAAVVSLNFDATPV 410


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 391 PPPADSVVLPAATDAVATRDASPPPPVATATRDXGPPLRS 510
           PPPA    + A + AV T   +PPP  AT +    PPL S
Sbjct: 559 PPPAPPPSVFAPSSAVPTPATAPPPVAATLSAP--PPLDS 596


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 391 PPPADSVVLPAATDAVATRDASPPPPVA---TATRDXGPP 501
           PPP     +P     +  + A PPPP++   T+TR   PP
Sbjct: 320 PPPPSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPP 359


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 391 PPPADSVVLPAATDAVATRDASPPPPVA---TATRDXGPP 501
           PPP     +P     +  + A PPPP++   T+TR   PP
Sbjct: 232 PPPPSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPP 271


>SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3)
          Length = 451

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 358 DRHSFKLARVRPPPADSVVLPAATDAVATRDASPPPP 468
           DRH F+L  + P  + S       + +   D +PPPP
Sbjct: 61  DRHDFELPLLLPRRSISTFSHQYNNQITKEDITPPPP 97


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 391 PPPADSVV-LPAATDAVATRDASPPPPVATAT 483
           P P +SVV +PA T++V T  A     V TAT
Sbjct: 347 PAPTESVVTMPAPTESVVTMPAPTESVVTTAT 378


>SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)
          Length = 671

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 385 VRPPPADSVVLPAATDAVATR--DASPPPPVA 474
           + PPP  +  LP    +  +R  +ASPPPP A
Sbjct: 183 LHPPPGQASQLPLQEQSSGSRAEEASPPPPPA 214


>SB_39165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 543 VIYSGGVRSNNRPERRAXVARRCSDWWRRAGVARRYS 433
           + +SG VR + RP R    +R  SD+WR   V+++ S
Sbjct: 10  IFFSGWVRYD-RPMRHTRHSRSLSDYWRHRLVSQKES 45


>SB_31131| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 407

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 391 PPPADSVV-LPAATDAVATRDASPPPPVATAT 483
           P P +SVV +PA T++V T  A     V TAT
Sbjct: 99  PAPTESVVTMPAPTESVVTMPAPTESVVTTAT 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,970,752
Number of Sequences: 59808
Number of extensions: 306759
Number of successful extensions: 1134
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)