Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0679
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.0  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   9.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 473  LQRRATXARRSGLLXERTPPLYITA 547
            L R AT     GLL   T  LY+T+
Sbjct: 1453 LSRHATSHELKGLLCGNTYQLYLTS 1477


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 473  LQRRATXARRSGLLXERTPPLYITA 547
            L R AT     GLL   T  LY+T+
Sbjct: 1449 LSRHATSHELKGLLCGNTYQLYLTS 1473


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 16  SLIFNTSIIKLCDCRINVCRWLLHDTIVEM 105
           S I NT+++ L  CR  V +  +H  ++ +
Sbjct: 51  SAIGNTTVLILITCRKRVSKSRIHIMLMHL 80


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -1

Query: 552 TTAVIYSGGVRSNNRPERRAXVARRCSDWW 463
           T  + ++GGV  N   +++  + R    +W
Sbjct: 77  TAGMTFNGGVGPNGLTKKQEMLVRSAIKYW 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,793
Number of Sequences: 438
Number of extensions: 2634
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)