Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0678
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    34   0.020
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    33   0.026
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    32   0.060
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    29   0.56 
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   1.3  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    28   1.3  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    26   5.2  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   6.9  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    25   9.1  

>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +1

Query: 301 EENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAP 438
           E++T  V++   E A KLK  GN A  A +Y KA+ LY +A++  P
Sbjct: 72  EDSTAHVNK---EEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDP 114


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 33.5 bits (73), Expect = 0.026
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 325 ESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALK-HA 435
           ES+ E A++  G   +  +AGEYDKA+   N++L+ HA
Sbjct: 2   ESSREEALRCIGLARKYLNAGEYDKALKFANKSLRIHA 39


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 32.3 bits (70), Expect = 0.060
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +1

Query: 286 ISLDNEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAPQTVLSILLH 465
           + LD +  T K     + +    K  GN  F  G Y  A   Y+EAL+  P    ++   
Sbjct: 204 LKLDPDCTTAKTLFKQVRKLENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKL 263

Query: 466 FTKTALLVMK 495
           +   A ++++
Sbjct: 264 YMNRATVLLR 273


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 370 RAFHAGEYDKAIALYNEALKHAPQTVLSI 456
           R+F +G+YD A+ L++E +  +P TVL +
Sbjct: 354 RSFSSGDYDLAMRLFSE-ISESPSTVLGL 381


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 576 DAESFTYFSLSFNAKVQSSLTCSTFLVFHNKQSGFGK 466
           DA++  +  L F    +  +TCS F+  HNK +G  K
Sbjct: 213 DAQTVGWSPLVFE---EEEVTCSAFVFLHNKNTGLDK 246


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 337 ERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAP 438
           ++A + +  GN  F +G++  AI  Y E  K AP
Sbjct: 397 DKAEESRVKGNELFKSGDFANAIKEYTEMTKRAP 430


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -3

Query: 599 HFFRSTRSTQKALHTFR*VLMQKCNLL*LVPHFSFFITSRAVLVKCSKIDRTVWGACFNA 420
           H F +  S Q A       L   C LL      S+   S+++ V C+   R V G C   
Sbjct: 185 HVFNNPESLQVAASLLLPALSGSCALL-----TSYSAKSKSLQVACTGDSRAVLGECTPD 239

Query: 419 SLYKAMALS 393
             ++A+ LS
Sbjct: 240 GSWEAIPLS 248


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 197 IAIGLGYLYLRNRLEDPEKRKHQNLKQKRQYLWIMKKTLLR 319
           + IGL  L+ +++LEDP+    Q +      L++ K  ++R
Sbjct: 183 VGIGLSRLFAQSKLEDPDLAHSQAISNSLG-LFLQKVNIIR 222


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 66  LTKLFTNKHSI*CLLKPSDNLRIWLLPVVHHFR 164
           LTK F N+  +   L  S + R+W LP VH F+
Sbjct: 272 LTKHFRNRVLV--SLYVSCSSRVWSLPYVHAFK 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,284
Number of Sequences: 5004
Number of extensions: 51758
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)