Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0678
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15) 35 0.064
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.064
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17) 32 0.45
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32) 31 0.59
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 30 1.8
SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 29 2.4
SB_17455| Best HMM Match : Ank (HMM E-Value=2.2) 29 4.2
SB_44671| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-26) 28 5.5
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 28 5.5
SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025) 28 7.3
SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021) 28 7.3
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 27 9.7
>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +3
Query: 405 CFIQ*SIEACPPDRPVDLATFYQNRSACYEKREMWNKLKKIALLH*NL-TKSM*SFLRRS 581
C+ + +IE CPP+ DL+TFYQNR+A YE+ + + + A L +K + +RR+
Sbjct: 163 CYTE-AIELCPPENKQDLSTFYQNRAAAYEQMNQFENVVEEATKALELNSKYTKALMRRA 221
Query: 582 RAAEKV 599
RA EK+
Sbjct: 222 RALEKL 227
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 253 EKASELKAKTTISLDNEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKH 432
EK + + K +E TT ++ S + KLKG N+ F +Y++AI Y EA++
Sbjct: 113 EKGNHEEKKAEDDGASEAKTTNMTPSEQAQVAKLKG--NKYFKGCKYEQAIKCYTEAIEL 170
Query: 433 AP 438
P
Sbjct: 171 CP 172
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 149 STPFPKWQLAILLGAPIA---IGLGYLYLRNRLEDPEKRKHQN 268
S+ KWQ+A+L+GAP+A + Y RN E E+ + ++
Sbjct: 69 SSGLEKWQIALLIGAPVAVVCVAGAVWYWRNSQEGEEEGERED 111
>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
Length = 206
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 304 ENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAP 438
EN+ + + ++ A K GNR + Y AIALY++A++ AP
Sbjct: 21 ENSPEEEQDKVKLAEAKKAEGNREYGLKNYVSAIALYSKAIEFAP 65
>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 34.7 bits (76), Expect = 0.064
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +1
Query: 340 RAMKLKGAGNRAFHAGEYDKAIALYNEALKHAPQTVLSILLHFTKTALLVMKN 498
RA+ LK GN AF ++ A+ +YNEAL AP S +L+ + A + ++
Sbjct: 333 RALHLKTIGNEAFCKQQFLTAVNMYNEALNLAPN---SAVLYANRAAAFIKRS 382
>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 340 RAMKLKGAGNRAFHAGEYDKAIALYNEAL 426
+A KLK GN A AG+ KAI Y EA+
Sbjct: 8 KAAKLKDQGNAALSAGDTQKAIEFYTEAI 36
>SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)
Length = 455
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 343 AMKLKGAGNRAFHAGEYDKAIALYNEALK 429
A+++K GN+ F AG+Y+ A++ Y ALK
Sbjct: 9 AVEIKEEGNKYFKAGDYEAALSSYAAALK 37
>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 355 KGAGNRAFHAGEYDKAIALYNEALKHAPQ 441
K GN AF G Y KA LY EAL+ P+
Sbjct: 37 KQEGNDAFTGGHYQKAYELYTEALEIDPK 65
>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
Length = 264
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 355 KGAGNRAFHAGEYDKAIALYNEALKHAPQ 441
K GN AF G Y KA LY EAL+ P+
Sbjct: 37 KQEGNDAFTGGHYQKAYELYTEALEIDPK 65
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 274 AKTTISLDNEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAP 438
AK S +++ + T+ S + K K AG+ A G++ KA+ LY+EA+K P
Sbjct: 2 AKNLCSDESKVDLTEQSRPGLHE--KAKWAGD-ACSKGDFQKAVELYSEAIKLDP 53
>SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 503
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 385 GEYDKAIALYNEALKHAP 438
G Y +A+A YN+ALKH P
Sbjct: 54 GNYKQALACYNQALKHNP 71
>SB_17455| Best HMM Match : Ank (HMM E-Value=2.2)
Length = 487
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 411 IQ*SIEACPPDRPVDLATFYQNRSACYEKREMWN 512
I+ S C P+ D + YQN C KRE WN
Sbjct: 272 IEKSFAECSPE---DRLSIYQNVLKCVAKREFWN 302
>SB_44671| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-26)
Length = 298
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +2
Query: 455 SCYILPK--------PLCLL*KTRNVEQVKEDCTFALKLNEKYVKLSASI 580
+CY LP +C K RN + + + FALK+ +K VKL A +
Sbjct: 178 TCYTLPSLVMWYTLYQICYTLKHRNTKVIPKSQQFALKVQQKVVKLLAFV 227
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 295 DNEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKH 432
D + + +KV E +E A KLK GN F +Y+ A Y +AL++
Sbjct: 285 DADIDFSKV-ELVVEVAEKLKVIGNEQFKQQKYEVAKKKYKKALRY 329
>SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025)
Length = 1266
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 441 DRPVDLAT--FYQNRSACYEKREMWNKLKKIALL 536
+RP L+ F ++S CY + WN+ KIAL+
Sbjct: 1022 ERPAVLSQYIFGDSKSFCYPENLQWNRTAKIALI 1055
>SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)
Length = 304
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 325 ESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALK 429
E+ +E A+ K GN + + KAI Y E +K
Sbjct: 78 ENPVENALSYKEEGNYEYKRKNFKKAIDAYTEGIK 112
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 359 PFSFMARSMALSDTLVVFSSLSKDIVVFALSSDAFSFLGLLIYFLGKGNL 210
P F+ S +LSD L + SSLS + +L SD + L FL +L
Sbjct: 324 PSDFLTSSSSLSDFLSLSSSLSDFLTSSSLPSDFLTSSSSLSDFLTSSSL 373
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,829,378
Number of Sequences: 59808
Number of extensions: 388093
Number of successful extensions: 1319
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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