Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0678
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-3|AAB97537.1|  207|Caenorhabditis elegans Hypothetical ...    37   0.014
U41007-3|AAA82267.1|  297|Caenorhabditis elegans Hypothetical pr...    36   0.024
AF016422-4|AAG24172.1|  320|Caenorhabditis elegans Hypothetical ...    34   0.098
U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small glutamine...    33   0.23 
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    31   0.52 
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    31   0.52 
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    31   0.52 
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      31   0.52 
AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to ye...    29   2.1  
Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U46753-12|AAM98047.2|  539|Caenorhabditis elegans Dishevelled re...    28   6.4  
U46753-11|AAM98048.1|  425|Caenorhabditis elegans Dishevelled re...    28   6.4  
U46753-10|AAM98049.1|  623|Caenorhabditis elegans Dishevelled re...    28   6.4  
Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF003384-4|AAO21379.1|  339|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF003384-3|AAK71373.1|  349|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AF043693-3|AAB97537.1|  207|Caenorhabditis elegans Hypothetical
           protein C34B2.5 protein.
          Length = 207

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 325 ESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAPQT---VLSILLHFTKTALLVMK 495
           E  I +   LK  GN  F  GE++KA   Y EA+   P T   V SILL  +  AL+ ++
Sbjct: 12  EDQITKVDSLKKEGNNFFANGEFEKANEKYQEAIASCPPTSTEVQSILLSNSAAALIKLR 71


>U41007-3|AAA82267.1|  297|Caenorhabditis elegans Hypothetical
           protein C33H5.8 protein.
          Length = 297

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 343 AMKLKGAGNRAFHAGEYDKAIALYNEALKHAPQTVL 450
           A +LK  GN AF   +Y KA+ +Y+++L+H P  ++
Sbjct: 8   AQRLKEQGNEAFKKKKYHKAMTIYSKSLEHWPDPIV 43


>AF016422-4|AAG24172.1|  320|Caenorhabditis elegans Hypothetical
           protein R09E12.3 protein.
          Length = 320

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 337 ERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAPQTVL 450
           E A + K  GN  F  G+Y  A+  YNEA+K  P+  +
Sbjct: 138 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI 175


>U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small
           glutamine-rich tetratricorepeat protein protein 1
           protein.
          Length = 337

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 322 SESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALK 429
           S+S I +A KLK  GN    A +++ A+  YN A+K
Sbjct: 98  SDSDISQANKLKEEGNDLMKASQFEAAVQKYNAAIK 133


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -1

Query: 460  ARSTGRSGGHASMLHCIKQWL---CHILQHEKPGYQHLLVSWRVLWHFRI 320
            A  T    GH  +L  +K+ L   CH LQH +  +Q ++ ++RV +H R+
Sbjct: 2040 ALRTRMEDGHLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVYYHVRL 2089


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -1

Query: 460  ARSTGRSGGHASMLHCIKQWL---CHILQHEKPGYQHLLVSWRVLWHFRI 320
            A  T    GH  +L  +K+ L   CH LQH +  +Q ++ ++RV +H R+
Sbjct: 2046 ALRTRMEDGHLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVYYHVRL 2095


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -1

Query: 460  ARSTGRSGGHASMLHCIKQWL---CHILQHEKPGYQHLLVSWRVLWHFRI 320
            A  T    GH  +L  +K+ L   CH LQH +  +Q ++ ++RV +H R+
Sbjct: 2046 ALRTRMEDGHLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVYYHVRL 2095


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -1

Query: 460  ARSTGRSGGHASMLHCIKQWL---CHILQHEKPGYQHLLVSWRVLWHFRI 320
            A  T    GH  +L  +K+ L   CH LQH +  +Q ++ ++RV +H R+
Sbjct: 2046 ALRTRMEDGHLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVYYHVRL 2095


>AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 4 protein.
          Length = 430

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = +1

Query: 319 VSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKH 432
           +S  A+++A++L         AG YD+A+ LY++A+++
Sbjct: 1   MSVPALQKAIELVTKATEEDTAGRYDQALRLYDQAIEY 38


>Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical
           protein C38C6.5 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +2

Query: 278 KRQYLWIMKKTLLRYPKVP*NAP*N*KVLVTGLFMLENMTKPLLYTMKH*SMPPRPSCRS 457
           K QY   + +  LRY KV  N P   K++ T   +L+   K   Y + H  +    SCR 
Sbjct: 122 KYQYTMYLARESLRYKKVSENMPIAYKIMPTTKDVLQEHIKHSAYAITH--IAQGGSCRD 179

Query: 458 CYIL 469
             I+
Sbjct: 180 LGIV 183


>U46753-12|AAM98047.2|  539|Caenorhabditis elegans Dishevelled
           related protein 1,isoform a protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 353 SFMARSMALSDTLVVFSSLSKDIVVFALSSDAFSFLGLLI 234
           +F   S A S + +  SS+S D++   L+ D  +FLG+ I
Sbjct: 279 NFRKPSRASSFSSITESSMSLDVITVNLNMDTVNFLGISI 318


>U46753-11|AAM98048.1|  425|Caenorhabditis elegans Dishevelled
           related protein 1,isoform b protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 353 SFMARSMALSDTLVVFSSLSKDIVVFALSSDAFSFLGLLI 234
           +F   S A S + +  SS+S D++   L+ D  +FLG+ I
Sbjct: 147 NFRKPSRASSFSSITESSMSLDVITVNLNMDTVNFLGISI 186


>U46753-10|AAM98049.1|  623|Caenorhabditis elegans Dishevelled
           related protein 1,isoform c protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 353 SFMARSMALSDTLVVFSSLSKDIVVFALSSDAFSFLGLLI 234
           +F   S A S + +  SS+S D++   L+ D  +FLG+ I
Sbjct: 279 NFRKPSRASSFSSITESSMSLDVITVNLNMDTVNFLGISI 318


>Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical
           protein F55F3.4 protein.
          Length = 881

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 274 AKTTISLDNEENTTKVSESAIERAMKLKGAGNRAFHAG-EYDKAIALYNEALKHAPQTVL 450
           AK+ I+L    N+T V + ++E+ +K    GNR      + +  IAL+    +H+ + +L
Sbjct: 425 AKSLIALSMPPNSTFVRKISLEKILKDAIIGNRMIGFNLDSNHRIALFVSKCRHSTRQIL 484


>AF003384-4|AAO21379.1|  339|Caenorhabditis elegans Hypothetical
           protein K07B1.4b protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 478 RFW*NVARSTGRSGGHASMLHCIKQWLCHILQHEKPGYQHLLV 350
           +FW    R  G   G   M+ C ++ + H+L+HEK G   +LV
Sbjct: 150 QFWTPWRREWGLLHG---MIDCSRESIKHVLEHEKKGKAVVLV 189


>AF003384-3|AAK71373.1|  349|Caenorhabditis elegans Hypothetical
           protein K07B1.4a protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 478 RFW*NVARSTGRSGGHASMLHCIKQWLCHILQHEKPGYQHLLV 350
           +FW    R  G   G   M+ C ++ + H+L+HEK G   +LV
Sbjct: 160 QFWTPWRREWGLLHG---MIDCSRESIKHVLEHEKKGKAVVLV 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,155,062
Number of Sequences: 27780
Number of extensions: 296211
Number of successful extensions: 837
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)