Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0677
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 113 2e-26
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 39 5e-04
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 31 0.19
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.58
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 2.3
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 3.1
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 5.4
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 7.1
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 9.4
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 25 9.4
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 9.4
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 9.4
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 113 bits (272), Expect = 2e-26
Identities = 57/96 (59%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLRTGKPLSVELGPXILGSIFDGIQRPLKDINELTQSIYIPKGINV 435
QVYEETSG+TVGDPV RTGKPLSVELGP + +I+DGIQRPLK I + +QSIYIP+GIN
Sbjct: 72 QVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPRGINT 131
Query: 436 PSLAREVDWEFNP-LNVKVGPTSPVGFVWYCTREHS 540
SL RE W+F P ++++G G V+ E+S
Sbjct: 132 ESLNREHKWDFTPNKDLRIGDHVSGGDVFGSVFENS 167
Score = 71.3 bits (167), Expect = 1e-13
Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = +2
Query: 68 SKGGLRTIAN-EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIXRLEGD 244
+K +R++ N +E+E R+G +F+VSGPVV A M G +MYELVRVG+ ELVGE+ R+ D
Sbjct: 8 AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQD 67
Query: 245 MAT 253
T
Sbjct: 68 KCT 70
Score = 53.6 bits (123), Expect = 2e-08
Identities = 23/46 (50%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = +2
Query: 509 DLYGIVHENTLVK-HRMLVPPKAKGTVTYIAPAGNYKVTDVVLETD 643
D++G V EN+L H++++PP+A+GTVTYIA AG+Y V + +LE +
Sbjct: 158 DVFGSVFENSLFNDHKIMLPPRARGTVTYIAEAGSYHVDEKLLEVE 203
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 39.1 bits (87), Expect = 5e-04
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 271 TSGVTVGDPVLRTGKPLSVELGPXILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAR 450
T G+ G V+ TG P+S+ +GP LG I + I P+ + + Y P + PS
Sbjct: 113 TEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEE 172
Query: 451 E 453
+
Sbjct: 173 Q 173
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 235 KTXNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDISEPLLILLIGDRP 83
+T +L E DTD+ VHS+S GS+ S D E +I ++G P
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 368 IPSKMEPKIXGPSSTDKGFPVRSTGSPTVTPE 273
IPS + P P T GFP R PT+ P+
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 177 ADPDIFSAVTTGPDTAKTYPN 115
AD +F AV PDTAK YPN
Sbjct: 33 ADAVVFKAVGVAPDTAK-YPN 52
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 456 NLPGQGRHVDTLGDVDGLSQLVDVLEGTLNTVKDGTQDTGTKFY*QRLSSTE 301
+L Q HVD D S L+ +L LN ++G K+Y SST+
Sbjct: 40 SLSAQQPHVD-----DQRSSLLSLLNAGLNASNQSPSNSGPKYYASHSSSTD 86
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 423 GYQRAFPXXXXXXXI*PIKC*GRSHITGGICMVLYTRT 536
G QR I P++C ++ +TG IC +++RT
Sbjct: 555 GAQRKRRKFKFGKQIGPVRCTLQNRVTGEICNTVFSRT 592
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = -3
Query: 637 FKHXVCDFVVPGR-CDIGNC 581
FKH VC F+ GR C NC
Sbjct: 8 FKHIVCPFLRTGRKCQSRNC 27
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 488 TLTFNGLNSQSTSLAREGTLI 426
T FNGL + TSLA + TL+
Sbjct: 24 TFGFNGLGTSRTSLAPQRTLV 44
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/76 (21%), Positives = 32/76 (42%)
Frame = +1
Query: 250 HHQVYEETSGVTVGDPVLRTGKPLSVELGPXILGSIFDGIQRPLKDINELTQSIYIPKGI 429
+H++ TS + VGD + + K L + + + + P +IN + S+ P +
Sbjct: 195 NHEIIVTTSDIAVGDYLDKCAKYLGIPWDNEMPAAALEQFASP--EINSTSYSLKPPIPL 252
Query: 430 NVPSLAREVDWEFNPL 477
N + F+ L
Sbjct: 253 NTREKVHSASFSFSGL 268
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 271 TSGVTVGDPVLRTGKPLSVELGPXILGSIFDGIQRPLKDINEL 399
TS +TVGD V+ + + LGS++ +++ D+ +L
Sbjct: 375 TSNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQL 417
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 168 DIFSAVTTGPDTAKTYPNLSSFSSLAIVLK 79
D + GP +T+PN+ S +SLA+ K
Sbjct: 244 DTHLPIKMGPLDVQTHPNIRSIASLALSRK 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,622
Number of Sequences: 5004
Number of extensions: 58181
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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