Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0677
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 69   3e-12
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 28   7.5  
SB_10162| Best HMM Match : Peptidase_M43 (HMM E-Value=4.1)             28   7.5  
SB_2410| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 27/45 (60%), Positives = 35/45 (77%)
 Frame = +2

Query: 509 DLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVLETD 643
           D+YG V ENT +KH +++ PKAKGT+TYIAP GNY + D +LE D
Sbjct: 9   DIYGYVQENTFIKHHIMLHPKAKGTITYIAPQGNYYIEDTILEID 53


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 289 GDPVLRTGKPLSVELGPXILGSIFDGIQRPL 381
           GD V RTG  + V +G  +LG + D +  P+
Sbjct: 24  GDIVKRTGAIVDVPVGEELLGRVVDALGNPI 54


>SB_47923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 298 LDHLQLHLKFLRIPGG-GHVTFKTXNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDI 122
           +DHL +HL      GG  H T    +L D F+     +  H +   L    D  R  EDI
Sbjct: 226 MDHL-IHLGSFNSNGGFWHTTLIEKHLIDYFVPFLPLERAHIKQCALVDLQDKGRKREDI 284

Query: 121 SEPLLILL 98
           ++ LL ++
Sbjct: 285 TDDLLNMI 292


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 247 HVTFKTXNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDI 122
           H+T    NLTD+  +T  D  + S   HL  SDD    G+D+
Sbjct: 484 HLTSDDGNLTDDVHLTSNDVYLTSDGVHL-TSDDVHLTGDDV 524


>SB_10162| Best HMM Match : Peptidase_M43 (HMM E-Value=4.1)
          Length = 647

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -1

Query: 495 GTDLNI*WVKFPVNLPGQGR 436
           G D+NI   +FPVNLPG+GR
Sbjct: 182 GFDINIPG-RFPVNLPGRGR 200


>SB_2410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 475 LNVKVGPTSPVGFVWYCTREHSGQAQ 552
           L V +G T P G+  YCT+E SG ++
Sbjct: 168 LRVTMG-TPPAGYTRYCTQEESGTSR 192


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 447 GQGRHVDTLGDVDGLSQLVDVLEGTLNTVKDGTQD 343
           G   H+  LGD     Q +  L G LNTV    QD
Sbjct: 480 GAETHLSNLGDAPSGKQELHALNGVLNTVDKHHQD 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,678,870
Number of Sequences: 59808
Number of extensions: 477983
Number of successful extensions: 1118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)