Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0677
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.83 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.83 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 316 PLSVELGPXILGS-IFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 465
           P  V+     LGS  +DG +  L+ ++E + S  +  G+++      V+W+
Sbjct: 161 PYDVQTCVLKLGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWD 211


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 358 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 465
           +DG Q  L+ I+E+     +  G+++      V+W+
Sbjct: 172 YDGFQVDLRHIDEIRGKNVVDIGVDLSEFYTSVEWD 207


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 358 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 465
           ++G Q  LK + +   S  + KGI++      V+W+
Sbjct: 181 YNGAQVDLKHMKQEAGSNLVAKGIDLSDFYLSVEWD 216


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 539 ECSRVQYHTNPTGDVGPTLTFNGLNSQSTSLAREGTLIP 423
           EC+ +QY  NP  +    +  N   S+S++LA + T  P
Sbjct: 107 ECN-IQYALNPNTEEYYIIEVNARLSRSSALASKATGYP 144


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +1

Query: 358 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 465
           +DG +  L+ ++E + S  +  G+++      V+W+
Sbjct: 176 YDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWD 211


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 469 NPLNVKVGPTSPVGFVWYCTREH 537
           NPLNV  GP  P   + Y  +++
Sbjct: 647 NPLNVPYGPVIPEQSLTYQDQQY 669


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/24 (20%), Positives = 16/24 (66%)
 Frame = -3

Query: 556 HPVLDQSVLVYNTIQIPPVMWDRP 485
           H +L+++  ++  + + P++ +RP
Sbjct: 259 HSILNRTNNIFELVTVEPILTERP 282


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 177 ADPDIFSAVTTGPDTAKTYPNLSS 106
           A+P    A TT P TA    +LS+
Sbjct: 22  ANPGTIQACTTSPATASLESSLSA 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,407
Number of Sequences: 438
Number of extensions: 4468
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)