Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0671
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   3.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   5.0  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   5.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.0  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   8.7  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 276 PSFTVKYMHSNAN 314
           P FT KY H N N
Sbjct: 58  PGFTGKYCHENIN 70


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 179 SPSCRSDGIPTPECSSANPRLENSS 253
           SPS     +PT   S++NP   + S
Sbjct: 76  SPSSTPSSLPTQRTSTSNPTYSSRS 100


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -2

Query: 335  EACKVFHICIRVHVLHCKTWPQCRQTP 255
            E+C  F++C+  H++     P     P
Sbjct: 1216 ESCSSFYVCVNGHLVPQNCAPGLHYNP 1242


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 545 VPKVWDTLYIGNHWRLDSLVILLFLTLSDGSILYR 441
           VP+ +D    GN+W LD     +F+  + G +  R
Sbjct: 144 VPRHYDDPGKGNYWMLDPSAEDVFIGGTTGKLRRR 178


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 547 TYSGMSQCSAKXCKNMMNHSKMLARYLKV 633
           T+SG      + CK   + S  L ++L++
Sbjct: 71  THSGERPYRCRLCKKAFSDSSTLTKHLRI 99


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 547 TYSGMSQCSAKXCKNMMNHSKMLARYLKV 633
           T+SG      + CK   + S  L ++L++
Sbjct: 327 THSGERPYRCRLCKKAFSDSSTLTKHLRI 355


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 441 AVQNAAITEGEEKKDDK 491
           AVQ +++TEG+  K  K
Sbjct: 65  AVQGSSLTEGKRSKRSK 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,894
Number of Sequences: 336
Number of extensions: 2667
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)