Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0671
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    35   0.009
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    34   0.015
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.4  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    25   9.4  

>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 471 EEKKDDKAIEPPMIPNVKGIPDFWYNIFRNVSMLSEMXQEHDE 599
           +E   ++ I    +P+ KGIP+FW     NV ++ EM    DE
Sbjct: 147 DELDHEEEIFQNNLPDPKGIPEFWLTCLHNVFLVGEMITPEDE 189


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 516 NVKGIPDFWYNIFRNVSMLSEMXQEHDE 599
           + KGIP+FW    +NV  LSEM    DE
Sbjct: 160 DTKGIPEFWLTAMKNVLSLSEMITPEDE 187


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 126  HLLKSGVTRNEMIAAITNRLHAEAMASLP 212
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -3

Query: 559 FLNMLYQKSGIPFTL 515
           +LN+L +KSG+PF+L
Sbjct: 299 YLNILVKKSGMPFSL 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,862
Number of Sequences: 5004
Number of extensions: 44867
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)