Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0671
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 29   4.3  
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)                      29   4.3  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   5.7  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               28   7.5  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                28   7.5  
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
 Frame = +3

Query: 465 EGEEK---KDDKAIEPPMIP-NVKGIPDFWYNIFRNVSMLSEMXQEHDEP 602
           E EEK    D++ IE   +P + KGIP+FW    +NV +LSEM QEHDEP
Sbjct: 215 EVEEKVKIDDEEKIETEQLPEDTKGIPEFWLTAMKNVELLSEMIQEHDEP 264



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = +2

Query: 257 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELA 436
           E   +E KFY EVHA               R  I +G  EP D+EC   W  D E+E+ A
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC--RWPSDAEDEDEA 198


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 210 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 112
           V +PS +HE D   PL F +GS +  T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
          Length = 1119

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +3

Query: 459 ITEGEEKKDDKA-IEPPMIPNV--KGIPDFWYNIFRN 560
           +TE +E+K+DKA IE    P +    +  ++YN FRN
Sbjct: 371 VTENKEEKEDKAKIEDSQTPEIFSHSLDLYFYNEFRN 407


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 368 TYEPNDDECLNPWRDDTEEEEL 433
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 489 KAIEPPMIPNVKGIPDFWYNIFRNVSMLSEMXQEHDE 599
           + I+PP+ P  K +PD   ++ R  + LS    EH+E
Sbjct: 156 RKIKPPVPPKPKVMPDRAASLSRQSASLSRRIPEHNE 192


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 430 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 290
           LFF   +T    +F +  FI   +     F K +   F++ F CMYF
Sbjct: 13  LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 555 RNVSMLSEMXQEHDEPF*NACKIFKSA 635
           RN+ ML  + +E  E   N C+IFK +
Sbjct: 702 RNIDMLISLQEERKEVLWNNCRIFKDS 728


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,800,212
Number of Sequences: 59808
Number of extensions: 360511
Number of successful extensions: 787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)