Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0671
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    36   0.033
U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine rece...    30   1.6  
AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical ...    28   6.6  
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 513 PNVKGIPDFWYNIFRNVSMLSEMXQEHDEP 602
           P+ KGI DFW    R   +++E  +EHD P
Sbjct: 108 PSAKGIKDFWLTALRTHDLVAEAIEEHDVP 137



 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +2

Query: 239 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
           L+N   + + IE+ FY  VH                R  IV G  EP  ++   P  +  
Sbjct: 33  LKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPILEGL 92

Query: 419 EEEELA 436
           E ++LA
Sbjct: 93  EGDQLA 98


>U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 29 protein.
          Length = 306

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 560 IPEYVVPKVWDTLYIGNHWRLDSLVILLFLT--LSDGSILYRPELTLLLQ 417
           IP  +   +W +LY  NH    +    L  T  +  G I+YR  LTL++Q
Sbjct: 132 IPSIIHMAIWFSLYKPNHETTTTTAFGLTATDMVLSGKIVYRSALTLIIQ 181


>AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical
           protein Y6B3B.3 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/51 (19%), Positives = 27/51 (52%)
 Frame = +3

Query: 435 LGAVQNAAITEGEEKKDDKAIEPPMIPNVKGIPDFWYNIFRNVSMLSEMXQ 587
           +G +++   +  +   DD +  P +I  +  +PD   N+ + +S++ E+ +
Sbjct: 680 IGKIESWKASLQQPASDDLSTYPAVIKGLVNLPDVELNVVKKISVIDELIE 730


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 304 ECMYFTVKLGLNVDKLL 254
           EC++ + K GLNVDK+L
Sbjct: 188 ECLHISAKSGLNVDKVL 204


>AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical
           protein Y51H7BM.1 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 552 ICCTKSLGYPLHW 514
           +CC K LGYP +W
Sbjct: 52  LCCEKELGYPSNW 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,876,092
Number of Sequences: 27780
Number of extensions: 262542
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)