Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0671
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -2

Query: 548 VVPKVW--DT-LYIGNHWRLDSLVI--LLFLTLSDGSILYRPELTLLLQC 414
           ++ ++W  DT  Y G H  + ++ +   L     DG ILY   LT+  +C
Sbjct: 113 MLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKC 162


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 389 ECLNPWRDDTEEEELA 436
           + L  W DD++EEEL+
Sbjct: 34  QMLGIWADDSDEEELS 49


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 308 IRVHVLHCKTWPQCRQTPLKSSQGADSPTNIRG*GCH 198
           ++ HVL   T P+ + TP   ++      NIR   CH
Sbjct: 391 VQTHVLTIHTIPEVKVTPRFQAKRLKEEANIR---CH 424


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 461 DGSILYRPELTLLLQC 414
           D ++LY  +LTL+L C
Sbjct: 117 DKTLLYMSKLTLVLSC 132


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 421 FSVITPWVETFIIIRFICAIHN 356
           +  ITP ++  + I   C +HN
Sbjct: 312 YKYITPLIQKHLKIHDTCGVHN 333


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 386 DECLNPWRDDTEEEELARGG 445
           DEC   W  D+ + ++A+GG
Sbjct: 254 DECDRLWILDSGKVDIAKGG 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,345
Number of Sequences: 438
Number of extensions: 2879
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)