Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0671
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    32   0.29 
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    31   0.50 
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    30   1.2  
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil...    28   4.7  
At5g55950.1 68418.m06978 transporter-related low similarity to U...    28   6.1  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    27   8.1  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    27   8.1  
At2g26530.1 68415.m03183 expressed protein                             27   8.1  

>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 438 GAVQNAAITEGEEKKDDKAIEPPMIPNVKGIPDFWYNIFRNVSMLSEMXQEHDE 599
           GA ++A + +G+EK  ++          KG+P FW    +N  ++SE   E DE
Sbjct: 106 GAPEDAKMDQGDEKTAEE----------KGVPSFWLTALKNNDVISEEITERDE 149


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 444 VQNAAITEGEEKKDDKAIEPPMIPNVKGIPDFWYNIFRNVSMLSEMXQEHDE 599
           V+ AA     E+ +DK+ E       KG+PDFW    +N  + +E   E DE
Sbjct: 104 VEGAAEEVKSEQGEDKSAEE------KGVPDFWLIALKNNEITAEEITERDE 149


>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 522 KGIPDFWYNIFRNVSMLSEMXQEHDE 599
           KG+P FW    +N  ++SE   E DE
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDE 150


>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105|SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
           PF00956: Nucleosome assembly protein (NAP)
          Length = 256

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 519 VKGIPDFWYNIFRNVSMLSEMXQEHDE 599
           +K IPDFW   F +   L E+  E D+
Sbjct: 70  IKTIPDFWLTAFLSHPALGELLTEEDQ 96


>At5g55950.1 68418.m06978 transporter-related low similarity to
           UDP-sugar transporter [Drosophila melanogaster]
           GI:14971008, UDP-glucuronic acid transporter [Homo
           sapiens] GI:11463949
          Length = 398

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 445 TAPS*LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI 314
           T P  +FF   + PW++   ++ F   + N S++ I  L+ F +
Sbjct: 239 TTPFTVFFLLALMPWLDPPGVLLFKWDLTNSSAILISALLGFLL 282


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 450 NAAITEGEEKKDDKAIEPPMIPNVKGIP 533
           +AA+T GE  KD K   PP  P    +P
Sbjct: 82  SAAVTNGETDKDKKEKPPPPPPGSVAVP 109


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 450 NAAITEGEEKKDDKAIEPPMIPNVKGIP 533
           +AA+T GE  KD K   PP  P    +P
Sbjct: 82  SAAVTNGETDKDKKEKPPPPPPGSVAVP 109


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 300 HSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 431
           H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,955,877
Number of Sequences: 28952
Number of extensions: 241540
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)