Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0670
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0230 + 15973390-15974645,16002878-16003097                       31   0.59 
05_05_0060 - 22015440-22015481,22015572-22015709,22016704-220167...    30   0.78 
08_02_1462 + 27308792-27308924,27309711-27309778,27309854-273101...    29   1.8  
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294...    28   4.2  
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473...    27   7.3  
07_03_1043 + 23506148-23506226,23506344-23506693,23506782-23507075     27   9.6  
05_07_0240 + 28606345-28607316                                         27   9.6  
04_04_0999 - 30002433-30003279,30003384-30003513,30003620-30003758     27   9.6  
01_06_1588 + 38474698-38477169                                         27   9.6  

>12_02_0230 + 15973390-15974645,16002878-16003097
          Length = 491

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 79  TAWTAGQGGGSFSCSSDMPKRRRLQDLHHKLRVRRHVEA 195
           TA+T   G G  SC S+ P++  L  L H  R RR  EA
Sbjct: 414 TAFTTS-GNGDLSCPSNFPRKEAL--LRHAFRARRFPEA 449


>05_05_0060 -
           22015440-22015481,22015572-22015709,22016704-22016799,
           22016911-22017135
          Length = 166

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 91  AGQGGGSFSCSSDMPKRRRLQDLHHK 168
           AG+GG      +D+P+ RRL+DL  K
Sbjct: 48  AGEGGAEADADADLPELRRLRDLEAK 73


>08_02_1462 +
           27308792-27308924,27309711-27309778,27309854-27310159,
           27310168-27310839
          Length = 392

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 279 GPXHLGVYPAMALSPSTHSWRARASVAXSFNMSPDAQF 166
           G  HL V   +AL P    WR R      +N+  D +F
Sbjct: 96  GVTHLAVGDRVALEPGISCWRCRHCKGGRYNLCEDMKF 133


>03_05_0843 +
           28126480-28127007,28127092-28127457,28129388-28129487,
           28130266-28130546,28130643-28130705,28131276-28131431,
           28131913-28132080,28132158-28132298,28132714-28132840,
           28132888-28132994,28134142-28134372,28134446-28134559,
           28135091-28135261
          Length = 850

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 8   RWFAVDPETGVLSYYLYDGPGDTIQPGQPARG 103
           RWFA+    GVLSYY   GP   +   +  RG
Sbjct: 106 RWFAL--HDGVLSYYKIHGPDRIVLSRETERG 135


>07_01_0633 -
           4735298-4735485,4736083-4736114,4736203-4736297,
           4736414-4736487,4736682-4736817,4736902-4736965,
           4737101-4737166,4737265-4737446,4737824-4737948,
           4738031-4738169,4738250-4738369,4738675-4738746,
           4738900-4738935,4739633-4739749,4739821-4739953,
           4740053-4740156,4740243-4740370,4740880-4741010,
           4741561-4741757,4743906-4744583
          Length = 938

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = -1

Query: 297 RLQGRVGPXHLGVYPAMALSPSTHSWRARASVAXSFNMSPDAQFMVKVLESSSLGHITAA 118
           R +GR G    GV PAMA +P+  S     +VA      P     +  + SSS     AA
Sbjct: 85  RGRGRGGGGGDGVRPAMAAAPAA-STPGPVAVAARSTPPPTPAVQIPAVASSSSAQPAAA 143

Query: 117 AK 112
           A+
Sbjct: 144 AQ 145


>07_03_1043 + 23506148-23506226,23506344-23506693,23506782-23507075
          Length = 240

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 67  RRHNTAWTAGQGGGSFSCSSDMPKRRRLQD 156
           RR   A   G GGG        PK+RRL D
Sbjct: 39  RRRRGARCVGGGGGGGEVDGGDPKKRRLSD 68


>05_07_0240 + 28606345-28607316
          Length = 323

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 107 PPPWPAVQAVLCLLVHHKDNKIEHQSQDQQQ 15
           PPP PA+      L  H D  +  Q Q QQQ
Sbjct: 274 PPPPPAIPVGPPALTEHGDELMLQQQQHQQQ 304


>04_04_0999 - 30002433-30003279,30003384-30003513,30003620-30003758
          Length = 371

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 134 PSDEDSKTFTINCASGDMLKLXATDARARQEWVD 235
           PS   S T T NC+SGD     +  ++  +E  D
Sbjct: 143 PSPSSSTTTTTNCSSGDSAGEQSNTSKEEEEETD 176


>01_06_1588 + 38474698-38477169
          Length = 823

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 35  GVLSYYLYDGPGDTIQPGQPARGEAHLAAA-VICPSDEDSKTF 160
           G + +  +D P DT+ PGQP    A L+   V+ P+   +  F
Sbjct: 141 GDVLWQSFDYPTDTLLPGQPVTATARLSTTDVLHPTSHYALRF 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,573,004
Number of Sequences: 37544
Number of extensions: 217734
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)