Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0670
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol bin... 37 0.006
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 29 2.1
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 27 8.7
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 27 8.7
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 27 8.7
AF067217-5|AAO38635.1| 856|Caenorhabditis elegans Hypothetical ... 27 8.7
AF067217-4|AAF99978.1| 887|Caenorhabditis elegans Hypothetical ... 27 8.7
AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi doma... 27 8.7
AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi doma... 27 8.7
>AF000195-7|AAC24270.1| 676|Caenorhabditis elegans Oxysterol
binding protein (osbp)related protein 4, isoform a
protein.
Length = 676
Score = 37.1 bits (82), Expect = 0.006
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 2 QQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASG 181
Q RWF ++ +T L YY + + GQ RG+ L AV+ E++ FTI G
Sbjct: 16 QYRWFKIENDT--LLYYT---SREKMLKGQQ-RGQIRLTGAVVGIDGENNSLFTIT-VEG 68
Query: 182 DMLKLXATDARARQEWV----DGLXAIAGY 259
+ D R R +WV + + A +GY
Sbjct: 69 KTFHMQGRDLRERNQWVRILENSIRASSGY 98
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 28.7 bits (61), Expect = 2.1
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -1
Query: 303 LSRLQG-RVGPXHLG-VYPAMALSPSTHSWRARASVAXSFNMSPDAQFMVKVLESSSLGH 130
+S QG ++ P L V A L+ H R + M+ A +V +L S++ H
Sbjct: 180 VSTTQGVKLEPNELETVMDACNLAAQLHVNRLEMHQLVEWRMALIAPNLVALLGSTTTAH 239
Query: 129 ITAAAK*ASPLAGCPGCIV 73
+ + A SPLA P C V
Sbjct: 240 LVSQAGGLSPLATMPSCNV 258
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 106 GSFSCSSDMPKRRRLQDLHHKLRVRRHVEA 195
G SCSS+ PKR +++ + K+++ + A
Sbjct: 293 GEASCSSETPKRPKVKRIPQKVQIESNTTA 322
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 106 GSFSCSSDMPKRRRLQDLHHKLRVRRHVEA 195
G SCSS+ PKR +++ + K+++ + A
Sbjct: 293 GEASCSSETPKRPKVKRIPQKVQIESNTTA 322
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 106 GSFSCSSDMPKRRRLQDLHHKLRVRRHVEA 195
G SCSS+ PKR +++ + K+++ + A
Sbjct: 293 GEASCSSETPKRPKVKRIPQKVQIESNTTA 322
>AF067217-5|AAO38635.1| 856|Caenorhabditis elegans Hypothetical
protein F56A6.1b protein.
Length = 856
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 98 RGEAHLAAAVI--CPSDEDSKTFTINCASGDMLKLXATDARARQEWVDGLXAIAG 256
+G+ H A V+ CP+ + IN DM+K+ A R+ D + G
Sbjct: 376 QGKIHFPAEVLLLCPNQTVTNDQMINNEQADMIKMSAAQPHIRKTTTDTIVRNVG 430
>AF067217-4|AAF99978.1| 887|Caenorhabditis elegans Hypothetical
protein F56A6.1a protein.
Length = 887
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 98 RGEAHLAAAVI--CPSDEDSKTFTINCASGDMLKLXATDARARQEWVDGLXAIAG 256
+G+ H A V+ CP+ + IN DM+K+ A R+ D + G
Sbjct: 376 QGKIHFPAEVLLLCPNQTVTNDQMINNEQADMIKMSAAQPHIRKTTTDTIVRNVG 430
>AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform c protein.
Length = 887
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 98 RGEAHLAAAVI--CPSDEDSKTFTINCASGDMLKLXATDARARQEWVDGLXAIAG 256
+G+ H A V+ CP+ + IN DM+K+ A R+ D + G
Sbjct: 376 QGKIHFPAEVLLLCPNQTVTNDQMINNEQADMIKMSAAQPHIRKTTTDTIVRNVG 430
>AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform a protein.
Length = 913
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 98 RGEAHLAAAVI--CPSDEDSKTFTINCASGDMLKLXATDARARQEWVDGLXAIAG 256
+G+ H A V+ CP+ + IN DM+K+ A R+ D + G
Sbjct: 402 QGKIHFPAEVLLLCPNQTVTNDQMINNEQADMIKMSAAQPHIRKTTTDTIVRNVG 456
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,607,919
Number of Sequences: 27780
Number of extensions: 142771
Number of successful extensions: 367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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