Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0670
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22530.1 68417.m03251 embryo-abundant protein-related similar...    30   0.65 
At1g03920.1 68414.m00377 protein kinase, putative contains prote...    29   2.0  
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica...    27   4.6  
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica...    27   4.6  
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica...    27   4.6  
At5g10510.1 68418.m01217 ovule development protein, putative sim...    27   6.1  
At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-contain...    27   6.1  
At2g21800.1 68415.m02591 expressed protein                             27   6.1  
At2g33320.1 68415.m04084 C2 domain-containing protein low simila...    27   8.1  
At2g02440.1 68415.m00183 hypothetical protein                          27   8.1  

>At4g22530.1 68417.m03251 embryo-abundant protein-related similar to
           embryo-abundant protein [Picea glauca] GI:1350531
          Length = 261

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 31  DWCSILLSL*WTRRHNTAWTAGQGGG 108
           DW S L +L  + RHN AW AG G G
Sbjct: 22  DWYSKLAAL--SHRHNLAWDAGTGNG 45


>At1g03920.1 68414.m00377 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 569

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 79  TAWTAGQGGGSFSCSSDMPKRRRLQDLHHKLRVRR 183
           T   AG GGGS S S+  PKR + + L H  + RR
Sbjct: 296 TVGNAGSGGGSESVST-TPKRSQQEQLEHWQKNRR 329


>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1150

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 119 QLNEPPPWPAVQAVLCLLVHHKDNKIEHQSQDQQQ 15
           QL +PP   + Q  L  L+H   N  + QSQ QQQ
Sbjct: 492 QLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQ 526


>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1164

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 119 QLNEPPPWPAVQAVLCLLVHHKDNKIEHQSQDQQQ 15
           QL +PP   + Q  L  L+H   N  + QSQ QQQ
Sbjct: 491 QLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQ 525


>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1165

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 119 QLNEPPPWPAVQAVLCLLVHHKDNKIEHQSQDQQQ 15
           QL +PP   + Q  L  L+H   N  + QSQ QQQ
Sbjct: 492 QLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQ 526


>At5g10510.1 68418.m01217 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 566

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 68  LVHHKDNKIEHQSQDQQQTIF 6
           L HH   + +HQ Q QQQ  F
Sbjct: 504 LYHHHQQQQQHQQQQQQQNFF 524


>At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF01852: START domain, PF00169:
           PH domain
          Length = 718

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 250 NGXEPVDPLLARAGVGSXQLQHVAGRAVYGEGLGVFVAWAYHC 122
           +G   + PL  R G    Q+QH+    + G G G   A+  HC
Sbjct: 333 SGGYNISPLKPRNGRPRTQVQHLIQIDLKGWGAGYLPAFQQHC 375


>At2g21800.1 68415.m02591 expressed protein
          Length = 475

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 247 HCWIHTKVXXANPPLQPRXQLAV 315
           HC +  KV  A P +QPR  +AV
Sbjct: 371 HCQVRLKVLVAIPKVQPRYAIAV 393


>At2g33320.1 68415.m04084 C2 domain-containing protein low
           similarity to splicing coactivator subunit SRm300 [Homo
           sapiens] GI:6649242; contains Pfam profile PF00168: C2
           domain
          Length = 602

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 67  RRHNTAWTAGQGGGSFSCSSDM 132
           ++HN   T G G G FSC S++
Sbjct: 542 KKHNRRHTEGGGNGLFSCFSNL 563


>At2g02440.1 68415.m00183 hypothetical protein
          Length = 138

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 73  HNTAWTAGQGGGSFSCSSDMPKRRR 147
           H+   T+G+ GG   CSS  PK ++
Sbjct: 32  HSVCSTSGEDGGEKFCSSSKPKPKK 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,315,939
Number of Sequences: 28952
Number of extensions: 136842
Number of successful extensions: 398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)