Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0666
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)               87   6e-18
SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   2.7  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   3.6  
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)           27   4.8  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)                 27   6.3  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                26   8.3  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score = 86.6 bits (205), Expect = 6e-18
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +2

Query: 116 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIDLGKK 268
           LNN VLFDK TY+KLYKEVP Y+LITP+VVSERLK+RGSLARRAL++L  K
Sbjct: 41  LNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRALLELQSK 91



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +1

Query: 256 LREKGLIKQVVQHHGQVIYTRATKGDD 336
           L+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 88  LQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 306 HLPMVLDYLFDETFFPKSMSALLAREPRTFNLSDTTAGVI 187
           H  +  DY F ET+ P+S+   L       N+SDT+ GV+
Sbjct: 165 HDQLYPDYAFAETWMPESIVNGLRALGHKVNVSDTSHGVV 204


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 3   RTRRLRPNSLKKHRRRRKDPVAAKPRRR 86
           R RR  P      RRRRK P  + PRRR
Sbjct: 907 RRRRDSPTPSPPPRRRRKSPSPSPPRRR 934


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 3   RTRRLRPNSLKKHRRRRKDPVAAKPRRRSG 92
           R R+ RP   +++RR RK P+    R +SG
Sbjct: 554 RGRKRRPRLGRRNRRLRKTPIVCTKRGKSG 583


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 171 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 88
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
          Length = 111

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 214 VKGPRFPGEKSTHRLREKGLIKQVVQHHG 300
           VKG    G   T  L + G +KQ++Q HG
Sbjct: 77  VKGQSIGGGMETAELYQSGKLKQLLQDHG 105


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 24  NSLKKHRRRRKDPVAAKPRRRSGPK 98
           N   KH  ++K PV   P+R  GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328


>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
          Length = 683

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 126 WLFNLSRTFPLDHFFFLALPPPDPSFFFC--VF*GCLAEAFASF 1
           WL   + TFPL  +  + + P DP  ++C  +F G    +F S+
Sbjct: 154 WLAATAITFPLFMYSKMVMSPFDPDTYWCFVLFPGDSLSSFPSY 197


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  PNSLKKHRRRRKDPVAAKPRRRSGPKEK 104
           PN+LK+ +RR  +    KP  RS  K +
Sbjct: 67  PNALKREKRRTTNSANRKPANRSPSKRE 94


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 9   RRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 104
           R L   + K HR RR+  +A +PR  +GP EK
Sbjct: 190 RNLAGPAEKPHRSRRETQLA-QPRNPTGPAEK 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,069
Number of Sequences: 59808
Number of extensions: 263824
Number of successful extensions: 822
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)