Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0664
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 45 3e-06
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 44 1e-05
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 29 0.31
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 0.71
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 0.94
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 1.6
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 3.8
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 3.8
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 5.0
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 6.7
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 6.7
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 24 6.7
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 24 8.8
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 24 8.8
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 45.2 bits (102), Expect = 3e-06
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +2
Query: 131 LFDKPTYEKLYKEVPQYKLITPGCRI*KVKGPRFPGEKSTHQLREKGLIKQVVQHHGQVI 310
+FDK +++ KEVP +K I+ + ++K + L E+G+I++V QH Q I
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80
Query: 311 YTRA 322
YTRA
Sbjct: 81 YTRA 84
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 43.6 bits (98), Expect = 1e-05
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +2
Query: 131 LFDKPTYEKLYKEVPQYKLITPGCRI*KVKGPRFPGEKSTHQLREKGLIKQVVQHHGQVI 310
+FDK +++ KEVP +K I+ + ++K + L E+G+I++V QH Q I
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80
Query: 311 YTR 319
YTR
Sbjct: 81 YTR 83
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 28.7 bits (61), Expect = 0.31
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 152 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 39
+M YQ TP HE WT SS L H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 0.71
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 159 SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 61
SF Y L NN++L +S + ++ F++ PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 0.94
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 33 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 131
K HR DP+ P RR GP + V + +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 370 FFNLYHSLCDWIIALGRTRVDHLPMVLDYLFDETFFPKLMSALL 239
F +S C +++AL TRV +++ FD PK++ A++
Sbjct: 517 FVGFKNSFCVFLVAL--TRVVSFALLIPIAFDLAIIPKVIIAII 558
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 3.8
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 192 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 61
V+ + C +L F ++ G+ N T P +F+ L PPP
Sbjct: 37 VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 3.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 354 IVYATGSSPLVARV*ITCPWCWTTCLMRP 268
I+Y T ++P++ + +T CW L P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 5.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 12 RLRPNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRN 158
R PNS+K+ +R K P++ +S P+ +T +R + +RN
Sbjct: 150 RTTPNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRN 195
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 138 SNNTWLFNLSRTFPLDHFFFLAL 70
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 6.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 80 SWLCRHRILPSSSVFFEAVW 21
+WL + ++PSSS F + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 325 GRTRVDHLPMVLDYLFDETFFPKLMSALLAREPRTFNLS 209
G TR+D L + +Y+ E PK L ++ + + +S
Sbjct: 139 GNTRLDLLNQLSEYISPEILLPKRRLEHLLQQAKDYQVS 177
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 23.8 bits (49), Expect = 8.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 195 GVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL-ALP 67
GV ++ G S +F+ + + + W F + P+D FL ALP
Sbjct: 159 GVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFLEALP 201
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 23.8 bits (49), Expect = 8.8
Identities = 9/45 (20%), Positives = 22/45 (48%)
Frame = -1
Query: 222 PLTFQIRQPGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDH 88
P++ ++R ++ Y TS++ S+ ++ T+P+ H
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIH 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,284
Number of Sequences: 5004
Number of extensions: 34614
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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